PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000497.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | bHLH | ||||||||
Protein Properties | Length: 231aa MW: 25366.2 Da PI: 6.0378 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.7 | 1.8e-12 | 167 | 212 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L+el+P+ +k + a++L +Av+YIk+L+ Itr_sc000497.1_g00006.1 167 SIAERVRRTKISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKDLE 212 689*********************7....688***************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.262 | 161 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-16 | 164 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.37E-13 | 165 | 216 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 8.6E-16 | 166 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.8E-13 | 167 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-9 | 167 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MFEQFTEYGA MRGMGSYGAG SNANADASFS SPSRFKNHTG FSSSGQPASS SGAMASISEI 60 GEEGVKEETS PGHGRFSETQ KNDEFSMPSW EDSDILSDLF LNVSEEKPFS NSNVSDIQKS 120 EDQCRPPGLL SHHLSLPKIP TQLSAIMQDS VPCKVRAKRG CATHPRSIAE RVRRTKISER 180 MRKLQELVPN MDKQTNTADM LDLAVDYIKD LESQVQVLSE NRAKCTCSSS K |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00195 | DAP | Transfer from AT1G51140 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019157886.1 | 1e-151 | PREDICTED: transcription factor bHLH130-like isoform X1 | ||||
Refseq | XP_019157888.1 | 1e-151 | PREDICTED: transcription factor bHLH130-like isoform X1 | ||||
Refseq | XP_019157889.1 | 1e-151 | PREDICTED: transcription factor bHLH130-like isoform X1 | ||||
TrEMBL | A0A3Q7JF47 | 3e-94 | A0A3Q7JF47_SOLLC; Uncharacterized protein | ||||
STRING | Solyc12g100140.1.1 | 2e-90 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4605 | 22 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51140.1 | 5e-47 | bHLH family protein |