PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000470.1_g00012.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

G2-like

Protein Properties

Length: 293aa MW: 33255.3 Da PI: 9.071

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000470.1_g00012.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	85.1	7.1e-27	23	73	1	51
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 k+rl+Wt+eLH+ F +av+qLGG+e+AtPk il++m+++gLt++hvkSHLQ Itr_sc000470.1_g00012.1 23 KERLKWTQELHNLFEKAVNQLGGPERATPKGILKVMGIPGLTIYHVKSHLQ 73 68************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.048	20	80	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.2E-24	21	73	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.23E-14	22	74	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.5E-20	23	73	IPR006447	Myb domain, plants
Pfam	PF00249	1.5E-8	25	73	IPR001005	SANT/Myb domain
Pfam	PF14379	6.2E-15	132	176	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MPGKITELPP PKMGSARPEG SSKERLKWTQ ELHNLFEKAV NQLGGPERAT PKGILKVMGI 60 PGLTIYHVKS HLQFSLLVGT KHILQFSIRA NQAMQEKYRM SKFVPEDPIR GKFEMRSISE 120 ILPNFSATSG AQLNEALQIQ MNVYKRLSDQ HEVQRSLKMK MEAQGRFLER IMEEHRMKAT 180 CSSSSKPSCK SYSPMSLPSL CEESESNVKD IESDSEVVDK NEIRSNELFP QRKRIRFDEE 240 VMSQTYSFAS PSGSSLINNL QLPFSGMEMN NIPWSLMSYQ SPMLPAAMFD SLI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-18	23	73	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-18	23	73	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-18	23	73	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-18	23	73	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-18	23	73	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-18	23	73	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-18	23	73	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-18	23	73	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019162295.1	1e-152	PREDICTED: myb family transcription factor PHL7-like
TrEMBL	A0A1U7Y7T1	1e-102	A0A1U7Y7T1_NICSY; protein PHR1-LIKE 1-like
STRING	XP_009799173.1	1e-102	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10101	20	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	4e-44	G2-like family protein