PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000079.1_g00015.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Trihelix

Protein Properties

Length: 305aa MW: 35105.4 Da PI: 6.4233

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000079.1_g00015.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	61.2	2.5e-19	34	116	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 Wt qe+ Li+a++e++ +l+rg+lk+ +Weev++++ +++s++qC++k+e+l+kry++++ +++++f+ Itr_sc000079.1_g00015.1 34 WTPQETVNLIQAYKEKWYSLNRGQLKASQWEEVAIAVaarcGFDELSKSSTQCRHKIEKLRKRYRAERLKPYP------NSWQFFE 113 ********************************99963333345699***************98765554......3477777 PP trihelix 84 qle 86 ++ Itr_sc000079.1_g00015.1 114 LMD 116 775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.9E-20	33	118	No hit	No description
PROSITE profile	PS50090	6.017	33	94	IPR017877	Myb-like domain
SMART	SM00595	0.0014	41	123	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MATASSPPPD SDHSLHSSPE TLTSLPKKPH PLPWTPQETV NLIQAYKEKW YSLNRGQLKA 60 SQWEEVAIAV AARCGFDELS KSSTQCRHKI EKLRKRYRAE RLKPYPNSWQ FFELMDSLER 120 GPLPIAAHPV TMVKYQNPNY RYEEDSDNEA VNPGYGSVDF RKNKSKSINH IVSGEISANG 180 FNNSTRNMNK MALSARRIPI HEFRKGNFAN EPSDDEGEDE EEVDEDGIEE EDGGVGDSEL 240 AAEIRGFAER FMRVEKRKIE MMRDTGRYRI EMEKKRLDMI LETQRKIADS VSRILEPNKR 300 VKMEL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019178756.1	0.0	PREDICTED: trihelix transcription factor ASIL2
TrEMBL	A0A0V0HQF0	1e-110	A0A0V0HQF0_SOLCH; Putative trihelix transcription factor ASIL1-like
STRING	PGSC0003DMT400051788	1e-110	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12466	15	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24860.1	2e-40	Trihelix family protein