PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000060.1_g00030.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

G2-like

Protein Properties

Length: 333aa MW: 36746 Da PI: 8.0229

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000060.1_g00030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.3	2.6e-31	44	97	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++F++a++ LGG++kAtPk +l+lm+v++Lt++hvkSHLQ+YR+ Itr_sc000060.1_g00030.1 44 PRLRWTPDLHNCFLHAINALGGQHKATPKLVLQLMNVPDLTISHVKSHLQMYRS 97 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.9E-30	40	98	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.793	40	100	IPR017930	Myb domain
SuperFamily	SSF46689	2.33E-15	42	98	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.6E-23	44	98	IPR006447	Myb domain, plants
Pfam	PF00249	1.9E-7	45	96	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MGSCGRSSGV RQYVRSKVPR LRWTPXGSCG RSSGVRQYVR SKVPRLRWTP DLHNCFLHAI 60 NALGGQHKAT PKLVLQLMNV PDLTISHVKS HLQMYRSMKP DLSDQVEEEK TKQPFVDVRT 120 AAAQAQAQDY HHYHLSSSSP SSSSSLVFLN PSPLPSKRGG ATEESTSWTK VGKGREKRRI 180 IMCEGEGEGE GEEEGCCLFC GLNKNENPPS YFCNVKDSTA AQCPNHSTTL TSLTHQELDF 240 FKVVEGGGEE EKWKTSKKRK RESEEEKDEE GCRLSLSLSI LPLQSTQTSN NNASSTSEIS 300 EAAAISSCSN PNPNFGLLLN PPILNLDLSL CTQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-17	45	99	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-17	45	99	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-17	45	99	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-17	45	99	3	57	Protein PHOSPHATE STARVATION RESPONSE 1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019171281.1	1e-132	PREDICTED: uncharacterized protein LOC109166849
Refseq	XP_019171282.1	1e-132	PREDICTED: uncharacterized protein LOC109166849

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5433	22	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	3e-30	G2-like family protein