PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000042.1_g00010.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 362aa    MW: 39593 Da    PI: 8.4196
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000042.1_g00010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.61.7e-121136227
                             -S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                             +++ C++++rtG C++G +C+F+H+p
  Itr_sc000042.1_g00010.1 11 GEPDCSYYMRTGLCRFGTTCRFNHPP 36
                             6899********************97 PP
2zf-CCCH38.12.6e-125781327
                             S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                             +++C+++++tGtCk+G +CkF+H++
  Itr_sc000042.1_g00010.1 57 QPECQYYLKTGTCKFGITCKFNHPR 81
                             799********************96 PP
3zf-CCCH37.34.5e-12103127327
                              S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                              + +C +++rtG+Ck+G++CkF+H++
  Itr_sc000042.1_g00010.1 103 ETECAYYMRTGQCKFGGTCKFHHPQ 127
                              578********************97 PP
4zf-CCCH382.7e-12230256127
                              --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                              +++++C+f+++tG Ck+G+ C+F+H++
  Itr_sc000042.1_g00010.1 230 PGQPECQFYMKTGDCKFGSVCRFHHPR 256
                              5789*********************96 PP
5zf-CCCH37.63.8e-12277302227
                              -S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                              ++ +C f++r+G+Ck+G++CkF H++
  Itr_sc000042.1_g00010.1 277 GEQICIFYSRYGICKFGPSCKFDHPM 302
                              6789********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.333937IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-6936IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-91136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-61437IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-41536IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.7465482IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-55481IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-95781IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-65883IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-56082IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.521100128IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5100127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6101128IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-10103127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-4106126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.84229257IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-6229256IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-9231256IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-6233259IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-5235259IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.436275303IPR000571Zinc finger, CCCH-type
SMARTSM003568.6E-7275302IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9277302IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-6277302IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-4279300IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MESAQYPVRD GEPDCSYYMR TGLCRFGTTC RFNHPPDRRL AIATARMIGE YPERVGQPEC  60
QYYLKTGTCK FGITCKFNHP REKAGIAGRV ALNVLGYPLR PNETECAYYM RTGQCKFGGT  120
CKFHHPQPSS MMVSLHGSPV YPPVRSPTSP GQLSYPLSRP SFITSPRWQG PSNYSPLMVP  180
PGMVSVPGYA YSGQLGSVSS AEGQKLTAGS SQVYGASRAI ERENVFPERP GQPECQFYMK  240
TGDCKFGSVC RFHHPRERLI PPPDCMLSPI GLPLRPGEQI CIFYSRYGIC KFGPSCKFDH  300
PMGVFAYSLS PSPSTDAPAG QFLLGSSSGT GALTLSSEGL VDAGSTNPRR LPSGDNNIET  360
EE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019235081.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A1J6KXF70.0A0A1J6KXF7_NICAT; Zinc finger ccch domain-containing protein zfn-like protein
STRINGSolyc11g008900.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52892439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-156zinc finger protein 1