PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000031.1_g00029.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 645aa    MW: 70687.2 Da    PI: 6.9198
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000031.1_g00029.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.77.3e-07277298526
                              --SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                              +C+ f+  G C++Gd C +aHg
  Itr_sc000031.1_g00029.1 277 PCPEFRNKGACRRGDMCEYAHG 298
                              8********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.206.4E-1714152IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.26E-1619152IPR020683Ankyrin repeat-containing domain
PfamPF127961.2E-855128IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.58459153IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0095989IPR002110Ankyrin repeat
CDDcd002044.64E-1461153No hitNo description
SMARTSM002480.04294126IPR002110Ankyrin repeat
PROSITE profilePS5008810.39294129IPR002110Ankyrin repeat
SMARTSM003568.0E-5272299IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4275300IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.737277300IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-4277298IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4305336IPR000571Zinc finger, CCCH-type
SMARTSM0035639308331IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MNLNHLMVET EDTFASLLEF AANNDVQGIE RWIERDPCGV DEVGLWYGRR NGSKQMVLEH  60
RTPLMVAANY GSIDVVKLIL SMPEVDVNRC CGRDKSTALH CGASGGSVNC VDTVKLLLGA  120
GANPNLVDAN GNRAIDVIVE SQNLQDMRLS LENLLRTDGV GEVLTPRSGS NSPPLSPSPG  180
NQSASCSSGS VSSPKSDEKY NDPPVSSMPE RKEYPVDPSL PDIKNSIYSS DEFRMFSFKI  240
RPCSRAYSHD WTECPFLHPG ENARRRDPRK YHYSCVPCPE FRNKGACRRG DMCEYAHGVF  300
ESWLHPAQYR TRLCKDGTKC NRRVCFFAHT QDELRPLYVS SGSAVPSPTS NAIEFAAAMG  360
LIPGSPSSPF TPPMSPSNNV IPTIGWPQQN VPALHLPGGS LQSSRLRASF HARDIPPEEL  420
NMLQISRSSI STSSFNRSES SSPRYCDQNL LKSCFSPTHK SAILNQFQLL SPINTNSPPK  480
SAENPLLQTP FGVSSPGRMS PRVMDPVSPL PSHVSLLSHH AKQQQFRSLS FNSSAAVGSP  540
ADSWPRWDFS GSKPSCVVNS EPFGKLRRSS SFEQANNGEE PDLSWVQRLV KESPQETTKD  600
KSANAIAIVG ASVEGSPSNS PIEHIDQSEL SSWLEQVQLG QLLAQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019187983.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLM1CJN80.0M1CJN8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000689260.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8832488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]