PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000015.1_g00024.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WRKY
Protein Properties Length: 439aa    MW: 47963.6 Da    PI: 7.0558
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000015.1_g00024.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.83.1e-30146202259
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              dDgynWrKYGqK+vk se+p sYY+Ct+++Cp+kkkve++  +++++ei+Y+g+Hnh+
  Itr_sc000015.1_g00024.1 146 DDGYNWRKYGQKQVKRSENPTSYYKCTHPNCPTKKKVETTL-EGEITEIVYKGSHNHP 202
                              8****************************************.***************8 PP
2WRKY106.31.5e-33304362159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gCpv+k+ver+ +d++ v++tYeg+Hnh+
  Itr_sc000015.1_g00024.1 304 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTLGCPVRKHVERAPQDTRSVITTYEGKHNHD 362
                              59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-25140204IPR003657WRKY domain
PROSITE profilePS5081120.725140204IPR003657WRKY domain
SuperFamilySSF1182902.09E-23144204IPR003657WRKY domain
SMARTSM007741.1E-31145203IPR003657WRKY domain
PfamPF031065.3E-23146202IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.6E-37289364IPR003657WRKY domain
SuperFamilySSF1182903.14E-29296364IPR003657WRKY domain
PROSITE profilePS5081137.815299364IPR003657WRKY domain
SMARTSM007741.3E-38304363IPR003657WRKY domain
PfamPF031069.8E-26305362IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MAASSGTVYS TAFTELLAGD VYPAGVKSLS PPSLPLSPST QLLDSPLLLS ASNLLPSPTT  60
GTFPAQPFSW NSTANENNGG FSDFSFLTNP ASAGELNWAY QEGNEVEDAA SSEKAIGELN  120
TVVNSQSRNC SDYNHQKNQA LKRSSDDGYN WRKYGQKQVK RSENPTSYYK CTHPNCPTKK  180
KVETTLEGEI TEIVYKGSHN HPMPQTTRRS AASPPSSYVS NGTGQLDNSV ATPENSSVSY  240
GDDDFEQSSR KRELGGEEFH EYDSNAKRWK AETGNENEGI SALGSRTVRE PRVVVQTRSD  300
IDILDDGYRW RKYGQKVVKG NPNPRSYYKC TTLGCPVRKH VERAPQDTRS VITTYEGKHN  360
HDVPAARGGG HSLNRPIPSN SNNSPAIAIR PSAMSHQSSL LAAILPTQGS GNFANQGTVF  420
SGSREDRLRD DLFLEMLLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-36146365878Probable WRKY transcription factor 4
2lex_A7e-36146365878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019167220.10.0PREDICTED: probable WRKY transcription factor 26
SwissprotQ6IEQ71e-117WRK24_ORYSJ; WRKY transcription factor WRKY24
TrEMBLA0A2G2WK681e-153A0A2G2WK68_CAPBA; Putative WRKY transcription factor 25
STRINGGLYMA02G39870.11e-149(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22862460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.17e-98WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  3. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  4. Zhang L, et al.
    Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.
    Plant Sci., 2015. 236: p. 214-22
    [PMID:26025535]