PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000011.1_g00101.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 410aa    MW: 44589.7 Da    PI: 8.6807
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000011.1_g00101.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.82.7e-115478226
                             -S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                             +++ C+++ rtG C++G++C+F+H+
  Itr_sc000011.1_g00101.1 54 GEPDCSYYIRTGLCRFGASCRFNHP 78
                             6899********************8 PP
2zf-CCCH38.91.4e-12100124327
                              S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                              +++C+++++tGtCk+G++CkF+H++
  Itr_sc000011.1_g00101.1 100 QPECQYYLKTGTCKFGATCKFHHPR 124
                              799********************96 PP
3zf-CCCH39.68.8e-13148170527
                              --SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                              +C++++rtG+Ck+G++CkF+H++
  Itr_sc000011.1_g00101.1 148 ECPYYMRTGQCKFGGTCKFHHPQ 170
                              7********************97 PP
4zf-CCCH38.81.6e-12299325127
                              --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                              +++++C+f+++tG Ck+G+ CkF+H++
  Itr_sc000011.1_g00101.1 299 PGQPECQFYMKTGDCKFGAVCKFHHPR 325
                              5789*********************96 PP
5zf-CCCH39.68.5e-13345371127
                              --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                              ++++lC f++r+G+Ck+G++CkF H++
  Itr_sc000011.1_g00101.1 345 PGEPLCTFYSRYGICKFGPSCKFDHPM 371
                              589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.0E-55279IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9765280IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-85478IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-55780IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-45877IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-697124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.35697125IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-10100124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6101126IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-5103124IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-6143170IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.234143171IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6145171IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-10148170IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-4149169IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-6298325IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.502298326IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-9300325IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-6302328IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-5304328IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-7344371IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.065344372IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-10346371IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5347371IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-4349369IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MMDFEAAAGI SASLASVTEG PSSLSPTLAQ DTLWQLSLRS METMESGPYP VRDGEPDCSY  60
YIRTGLCRFG ASCRFNHPSN RKLAIAAARM KGEYPERVGQ PECQYYLKTG TCKFGATCKF  120
HHPRDKAGIA GRVALNVMGY PLRPNEIECP YYMRTGQCKF GGTCKFHHPQ PSNMMVSLRG  180
SPAYPPVQSP TTPGQLSYPL SRASFITNPR WQGPSSYTPL IVPQGVVSVP GFAYSGQLGS  240
VSSPESQQLT VGNSQAYGLS RTSEVANMGS QGMNPSYRAG TLPMGYYALQ RENVFPERPG  300
QPECQFYMKT GDCKFGAVCK FHHPRERLIP PPDSLLSPIG LPLRPGEPLC TFYSRYGICK  360
FGPSCKFDHP MGVFTYNMSP SSTTNAPTAR HFLGSSSGTG TLTLSSEAAC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019193941.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A1J6KXF70.0A0A1J6KXF7_NICAT; Zinc finger ccch domain-containing protein zfn-like protein
STRINGXP_009793876.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52892439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-165zinc finger protein 1