PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G045873.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

MYB_related

Protein Properties

Length: 499aa MW: 55270.9 Da PI: 6.7345

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G045873.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.8	1.2e-08	52	78	1	28
TSSS-HHHHHHHHHHHHHTTTT-HHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIa 28 r rWT+eE+ ++++a k++G W++I HL.SW.v1.0.G045873.1 52 RERWTEEEHRKFLEALKLYGRA-WRKIE 78 78****************88.*95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.62E-8	46	94	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.3E-10	50	92	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	5.5E-6	52	85	IPR009057	Homeodomain-like
Pfam	PF00249	4.8E-6	52	78	IPR001005	SANT/Myb domain
CDD	cd00167	9.88E-5	54	85	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence Send to blast
MAIHDENDAS PSAGVFSSEN AISLCVKLKD QFSCGNEFCP KVRKPYTITK QRERWTEEEH 60 RKFLEALKLY GRAWRKIEDF KSDNQTFKNI YSTTNMLEQR LRFKFEVMLK NSSIRFTALI 120 PIPIAQDPNG SNVNTEESIE IPPPRPKRKP MHPYPRKLAH STKEELSIPE HSTKSYLSLS 180 EQDNQSPKSV LSAMGSDTIG LSGSNTQDES LSPVSSSTGI HDGSILFSQP NSSTEDIGSP 240 PAAVKASVSS PSQLPVKLEL FSQDNACAKG TSAEIVSARS LTLFGTIVFV ADSHRPSSPT 300 MGTCKPLPSC EQEEKLAQPL PSPVTETESS TETAHCVWGH LPRAVQALYL LHFQNGFPNL 360 VGSGSVTPLP LWPYYGGLPF PSNNQDQVKG SLDSNLSEVQ EVNEEGSWSG SNTGSLNSDK 420 CLDADSQSRY TSLEKEEKEV SILEWKPSSR SAFSQHKISS EKYKRGFVPY KRSRVETDRQ 480 SLTMKGQERQ ENRIQLCL*

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence Send to blast

MAIHDENDAS PSAGVFSSEN AISLCVKLKD QFSCGNEFCP KVRKPYTITK QRERWTEEEH  60
RKFLEALKLY GRAWRKIEDF KSDNQTFKNI YSTTNMLEQR LRFKFEVMLK NSSIRFTALI  120
PIPIAQDPNG SNVNTEESIE IPPPRPKRKP MHPYPRKLAH STKEELSIPE HSTKSYLSLS  180
EQDNQSPKSV LSAMGSDTIG LSGSNTQDES LSPVSSSTGI HDGSILFSQP NSSTEDIGSP  240
PAAVKASVSS PSQLPVKLEL FSQDNACAKG TSAEIVSARS LTLFGTIVFV ADSHRPSSPT  300
MGTCKPLPSC EQEEKLAQPL PSPVTETESS TETAHCVWGH LPRAVQALYL LHFQNGFPNL  360
VGSGSVTPLP LWPYYGGLPF PSNNQDQVKG SLDSNLSEVQ EVNEEGSWSG SNTGSLNSDK  420
CLDADSQSRY TSLEKEEKEV SILEWKPSSR SAFSQHKISS EKYKRGFVPY KRSRVETDRQ  480
SLTMKGQERQ ENRIQLCL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010101053.1	1e-156	protein REVEILLE 1
TrEMBL	W9REF0	1e-155	W9REF0_9ROSA; Myb-like protein G
STRING	XP_010101053.1	1e-155	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2956	33	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	2e-29	MYB_related family protein