PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G044152.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 329aa    MW: 36553.8 Da    PI: 6.2824
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G044152.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.1e-161462148
                          TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT+eEde+lv+++k+  g+ +W++ ++  g+ R++k+c++rw +yl
  HL.SW.v1.0.G044152.1 14 KGPWTAEEDEILVQYIKKNNGHgSWRSLPKLAGLLRCGKSCRLRWTNYL 62
                          79****************98888**********99************97 PP
2Myb_DNA-binding50.26e-1668113148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           rg++T++E++l+++++ +lG++ W++Ia+ ++ gRt++++k+ w+++l
  HL.SW.v1.0.G044152.1  68 RGPFTQDEEKLIIQLHGMLGNR-WAAIASQLP-GRTDNEIKNLWNTHL 113
                           89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-23565IPR009057Homeodomain-like
PROSITE profilePS5129415.573962IPR017930Myb domain
SuperFamilySSF466896.36E-2911109IPR009057Homeodomain-like
SMARTSM007172.2E-111364IPR001005SANT/Myb domain
PfamPF002498.1E-141462IPR001005SANT/Myb domain
CDDcd001675.31E-101662No hitNo description
PROSITE profilePS5129425.24263117IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.3E-2666117IPR009057Homeodomain-like
SMARTSM007179.4E-1567115IPR001005SANT/Myb domain
PfamPF002494.5E-1568113IPR001005SANT/Myb domain
CDDcd001675.06E-1170113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MGRTPCCDKK GLKKGPWTAE EDEILVQYIK KNNGHGSWRS LPKLAGLLRC GKSCRLRWTN  60
YLRPDIKRGP FTQDEEKLII QLHGMLGNRW AAIASQLPGR TDNEIKNLWN THLKKRLLCL  120
GLDPQTHEPF NSNSHYPSTT SSPASPTTRH MAQWESARLE AEARLSRESS LFTSTAQPFT  180
TKSNDSDHFL RLWNSEVGDS FRKVAAATKD DKTACCSPVS QASVSALTTE AGPNRPGFDT  240
VAGDQAEDMD CKSYFIKYCE DDHHHVLLGA GSDSSCSNDM EDSSDSSALQ LLLDFPINND  300
MSFLEENCGD HYATDPAMLS ENSFICRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27121175108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00114ampDAPTransfer from AT3G61250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2295821e-125KP229582.1 UNVERIFIED: Boehmeria nivea MYB transcription factor-like (MYB26) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010105966.11e-166transcription factor MYB41
SwissprotQ9M2D91e-126MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A2P5F2P70.0A0A2P5F2P7_TREOI; MYB transcription factor
STRINGXP_010105966.11e-165(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23313280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-113myb domain protein 17