PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G043678.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family B3
Protein Properties Length: 416aa    MW: 46859.1 Da    PI: 7.4733
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G043678.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.23.5e-14801541698
                           EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                    B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                           + lpkkf++ h  + +++++++ledesg++ + k+     +  + l++GW++F  a++L egD+vvF+l++    +++v ++r
  HL.SW.v1.0.G043678.1  80 MGLPKKFCDMHL-P-KQDTMMVLEDESGQVCDAKY--LALK--VGLSAGWRGFSIAHKLVEGDVVVFHLVS--PLKFKVYIIR 154
                           789*****9995.3.37789***************..4444..44***********************986..5555888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.39165156IPR003340B3 DNA binding domain
SMARTSM010196.5E-1072156IPR003340B3 DNA binding domain
SuperFamilySSF1019361.39E-1779156IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.3E-1579156IPR015300DNA-binding pseudobarrel domain
CDDcd100174.07E-1980154No hitNo description
PfamPF023622.2E-1180154IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MVVAQRRQSP SDSSPQKVKR GRPTKEKEMR VVCYDPMKTE SNKRKKVNVE SLYNNSKAAS  60
PTMERAYEVQ ANLAPQFPSM GLPKKFCDMH LPKQDTMMVL EDESGQVCDA KYLALKVGLS  120
AGWRGFSIAH KLVEGDVVVF HLVSPLKFKV YIIRSHCPDE VDGALGLLKL EAHMKQMDNT  180
GNIIACEKET KSLKPDVLDC PFNINIQKTI SWTSEQSDKD YEVIGPEVLD GIRLSESAIS  240
FEQVKHFDDF NILVNGLIIN SELPKYLLAK YYELCRSQKA FLHEHILEGL NCKLVAGVIS  300
ETINIADAIR ASKISSSVND FTTWEKTLKA FEGLGMNVGF LCSRLEQLAS LASKSKRYEN  360
VKVEREDAKE ELRSLEKKML IVKERLSSLD TEFEAIGVHF QDLQLKFKEV ASAPW*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024029001.11e-168B3 domain-containing protein Os01g0234100
TrEMBLA0A2P5CQR40.0A0A2P5CQR4_TREOI; B3 DNA binding domain containing protein
STRINGXP_010107958.11e-161(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.17e-27B3 family protein