PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G041372.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C3H
Protein Properties Length: 388aa    MW: 42820.9 Da    PI: 7.077
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G041372.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.5e-08140160526
                           --SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                            C++f++ G+Ck Gd+C FaHg
  HL.SW.v1.0.G041372.1 140 ACPDFRK-GHCKKGDSCEFAHG 160
                           7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.0887124IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-6135161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.089136162IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-6140160IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-5140162IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.981170194IPR000571Zinc finger, CCCH-type
SMARTSM0035610170193IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MMLGETHRPN PTIHVPPWDL TVDDPTAEMY SPFPLSGVSI NSDCNGGDYS PYYLHEALSA  60
LSPYLQSAND LDADSDSDVS GRESDAPVDA YSCDHFRMFE FKVRRCARGR SHDWTECPYA  120
HPGEKARRRD PRKFHYSGTA CPDFRKGHCK KGDSCEFAHG VFECWLHPAR YRTQPCKDGT  180
NCRRRVCFFA HTPDQLRVLP QQSPKGSNAA ESYDGSPLRQ AIEASCVKTL PFLSPPTSIS  240
PPATPQADSP PMSPMAHVLS RSLGSSSINE MVASLRDLRL GQVKSLPSSW NNTQKGSPGF  300
GSPRGSILRP GFCSLPTTPT RAPTRPSYLD FCDLEEEPAM ERVESGRDIR AKMFEKLSKE  360
NSLNRVDPNP NPSVGAPDVG WVSELVK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010086901.10.0zinc finger CCCH domain-containing protein 20
SwissprotQ9M0G21e-140C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A2P5CN830.0A0A2P5CN83_PARAD; Zinc finger, CCCH-type (Fragment)
STRINGXP_010086901.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-127C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]