PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G041310.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C3H
Protein Properties Length: 488aa    MW: 54865.8 Da    PI: 6.9595
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G041310.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.59.7e-083453525
                          --SGGGGTS--TTTTT-SS-S CS
               zf-CCCH  5 lCrffartGtCkyGdrCkFaH 25
                          +C f++r G C yG+rC++ H
  HL.SW.v1.0.G041310.1 34 ICTFYQR-GLCAYGSRCRYQH 53
                          7**9999.************* PP
2zf-CCCH19.12.3e-06143164426
                           ---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                           ++C+ fa+ G C++G++C+ +Hg
  HL.SW.v1.0.G041310.1 143 PICS-FAAAGDCPRGEKCPHIHG 164
                           6788.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.615128IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-5127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-7326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.4642956IPR000571Zinc finger, CCCH-type
SMARTSM003560.00543055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-53254IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-53453IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-43454IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.615139166IPR000571Zinc finger, CCCH-type
SMARTSM003560.13140165IPR000571Zinc finger, CCCH-type
SuperFamilySSF578502.89E-13198272No hitNo description
Gene3DG3DSA:3.30.40.109.5E-10201267IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001623.19E-4207267No hitNo description
SMARTSM001842.9E-7208265IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.357208266IPR001841Zinc finger, RING-type
PfamPF000973.8E-7208265IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180232241IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.028295323IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.638295324IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MSKRVLCKFF AHGACLKGEH CEYSHDWKDP PNNICTFYQR GLCAYGSRCR YQHAKASQSQ  60
SSGSSSSTSS QQFPVSDSWS RPHSSSTSSN GVALVSGVIS ELSASSRPFV VPKQLAWNQG  120
YEQSDSLDSG DVGESSLSPV DLPICSFAAA GDCPRGEKCP HIHGDLCPTC GKHCLHPYRL  180
DEKEEHLRTC EKKHKNLEAL KHSQEIECSV CLERVLSKPT AAERKFGLMS ECDHPFCISC  240
IRNWRSSSPT SGLDVNSALR ACPICRKLSY FVVPSVIWYT SKEEKQEIVN SYKAKLKSID  300
CKHFDFGNGN CPFGTSCFYK HTVKPGSYVW KHHKPPPRRR APHRSNVVDM DAIFDVFEPL  360
DDMECLMDDG LDSEDASTWE MGLLFSLMGF DTSDSSSDED FHAYRDGRLE EVALRHLGNE  420
EGQTVIAKHD VYSYEQEDNK RLYGMVLYVI FCRWYARLIT VTQQSVWRAM HDGGRERLVL  480
LGVINLK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018816679.10.0PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1
SwissprotE0X9N41e-148C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A2P5AI930.0A0A2P5AI93_PARAD; Cdk-activating kinase assembly factor
STRINGEOX967030.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102113340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-137C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]