PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G039124.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

C3H

Protein Properties

Length: 706aa MW: 77037.6 Da PI: 7.2493

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G039124.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.8	7.8e-08	280	300	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd C +aHg HL.SW.v1.0.G039124.1 280 PCPEFRK-GACRRGDLCEYAHG 300 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.25.40.20	1.5E-17	9	171	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	2.8E-16	19	152	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.60E-13	56	171	No hit	No description
Pfam	PF12796	2.5E-8	57	126	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	17.051	57	171	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.94	57	87	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	12.796	92	127	IPR002110	Ankyrin repeat
SMART	SM00248	9.6E-5	92	124	IPR002110	Ankyrin repeat
PRINTS	PR01415	1.8E-5	93	108	IPR002110	Ankyrin repeat
PRINTS	PR01415	1.8E-5	111	125	IPR002110	Ankyrin repeat
SMART	SM00356	2.9E-5	275	301	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.8E-5	280	300	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.568	280	302	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.4E-4	308	338	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	40	310	333	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 706 aa Download sequence Send to blast
MNGLTVKAED SLSNLLELAS DNDVEGFKRS IEHDSSSIND IGVWYSRRKG AKHIVSEYRT 60 PLMVSATYGS VDVLKLVLSC PEVDVNLSCG VHKSTALHCA ASGGSVDALD VVKLLLSAGA 120 DPNLMDANGH RPVDVIVIHP KLQGMKAIFE ELLSKDAYGG SVGEHPMHLS INCSKSDSST 180 LSSSPDNGVH SPHSVSSPVI SKMSDLPHIS TMEKKEYPID PSIPDIKNSI YATDEFRMFS 240 FKVRPCSRAY SHDWTECPFV HPGENARRRD PRKFHYSCVP CPEFRKGACR RGDLCEYAHG 300 VFECWLHPAQ YRTRLCKDGT SCNRRVCFFA HRTEELRPLY VSTGSGVPSP RASASGPNGP 360 SVMDMAAALS LFPGSPSSVS AMSPSPFSQP MSPSANGMSH SSMAWPQPNV PTLHLPGSNL 420 QSSRLRSSFS ARDIPPEDLN MLLELDAQQQ LFNDMNCFSQ PRMSSASASR SCRSKTLTPS 480 NLEELFSAEI SSSPRYSDHM TASTFSPTHK SALLNQFQHQ QQCMLSPINT AVMSPKTVDH 540 PLLQATFGVQ SPGRMSPRSV EPISPMGARL SAFSQREKQQ HQQLRSLSSR ELGSNHTSSV 600 VGSPVNWSKW GSPNGKLDWS VNNGEDQSRM KRSSSFEFGN NGEEPDLSWV QSLVKESPPE 660 MMKDKPAPPV RNGAAASGES LNSKSQIESI DHSVLGAWVE QMQLA*

Sequence ? help Back to Top

Protein Sequence Length: 706 aa Download sequence Send to blast

MNGLTVKAED SLSNLLELAS DNDVEGFKRS IEHDSSSIND IGVWYSRRKG AKHIVSEYRT  60
PLMVSATYGS VDVLKLVLSC PEVDVNLSCG VHKSTALHCA ASGGSVDALD VVKLLLSAGA  120
DPNLMDANGH RPVDVIVIHP KLQGMKAIFE ELLSKDAYGG SVGEHPMHLS INCSKSDSST  180
LSSSPDNGVH SPHSVSSPVI SKMSDLPHIS TMEKKEYPID PSIPDIKNSI YATDEFRMFS  240
FKVRPCSRAY SHDWTECPFV HPGENARRRD PRKFHYSCVP CPEFRKGACR RGDLCEYAHG  300
VFECWLHPAQ YRTRLCKDGT SCNRRVCFFA HRTEELRPLY VSTGSGVPSP RASASGPNGP  360
SVMDMAAALS LFPGSPSSVS AMSPSPFSQP MSPSANGMSH SSMAWPQPNV PTLHLPGSNL  420
QSSRLRSSFS ARDIPPEDLN MLLELDAQQQ LFNDMNCFSQ PRMSSASASR SCRSKTLTPS  480
NLEELFSAEI SSSPRYSDHM TASTFSPTHK SALLNQFQHQ QQCMLSPINT AVMSPKTVDH  540
PLLQATFGVQ SPGRMSPRSV EPISPMGARL SAFSQREKQQ HQQLRSLSSR ELGSNHTSSV  600
VGSPVNWSKW GSPNGKLDWS VNNGEDQSRM KRSSSFEFGN NGEEPDLSWV QSLVKESPPE  660
MMKDKPAPPV RNGAAASGES LNSKSQIESI DHSVLGAWVE QMQLA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024187061.1	0.0	zinc finger CCCH domain-containing protein 30-like
Refseq	XP_024187067.1	0.0	zinc finger CCCH domain-containing protein 30-like
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A2P5E711	0.0	A0A2P5E711_TREOI; Transmembrane protein
STRING	XP_010088235.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1732	33	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]