PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G039068.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 305aa    MW: 34447.7 Da    PI: 6.8599
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G039068.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.41.8e-191461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT+eEd++lv+++k++G gtW++ +++ g+ R++k+c++rw +yl
  HL.SW.v1.0.G039068.1 14 KGAWTPEEDQILVNYIKRHGHGTWRSLPKHAGLLRCGKSCRLRWTNYL 61
                          79******************************99************97 PP
2Myb_DNA-binding54.43e-1767112148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           rg++++eE+  ++++++++G++ W+ Ia+ ++ gRt++++k++w+++l
  HL.SW.v1.0.G039068.1  67 RGPFSQEEENTIIQLHAMFGNR-WAVIASQLP-GRTDNEIKNYWNTHL 112
                           89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-25564IPR009057Homeodomain-like
PROSITE profilePS5129417.858961IPR017930Myb domain
SuperFamilySSF466897.49E-3111108IPR009057Homeodomain-like
SMARTSM007171.7E-141363IPR001005SANT/Myb domain
PfamPF002493.2E-171461IPR001005SANT/Myb domain
CDDcd001671.20E-111661No hitNo description
PROSITE profilePS5129426.18962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-2765115IPR009057Homeodomain-like
SMARTSM007177.0E-1866114IPR001005SANT/Myb domain
PfamPF002491.7E-1667112IPR001005SANT/Myb domain
CDDcd001678.20E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MGKIPCCDKS GVKKGAWTPE EDQILVNYIK RHGHGTWRSL PKHAGLLRCG KSCRLRWTNY  60
LRPGIKRGPF SQEEENTIIQ LHAMFGNRWA VIASQLPGRT DNEIKNYWNT HLKKRAICLA  120
ENLQENLLLC QYDNPSHIKD QLSNVTRHMI QWESARVEAE LRLSTESSQL SSSPNKMADR  180
FLQLWNSDIG KSFREIKPKD GDMYQSNEPE ITSTAKFGSS SSVPIQAGNI KNSNSTNIIQ  240
QERDGYKPIT DSNSSSLCDF SDITSTVSDM LLDSPVGYDL DFFQENEDGF AISLDRSPDN  300
PLLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021671666.11e-111transcription factor MYB41-like
SwissprotQ9M2D95e-90MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A2P5A6091e-154A0A2P5A609_PARAD; MYB transcription factor
STRINGXP_010107438.11e-109(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23313280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.14e-87myb domain protein 17