PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G037085.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C2H2
Protein Properties Length: 484aa    MW: 53866.2 Da    PI: 8.7994
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G037085.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2224.3e-07276298123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           + C+ Cgk F+r  nL+ H+r H
  HL.SW.v1.0.G037085.1 276 HYCQVCGKGFKRDANLRMHMRAH 298
                           68*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.6E-6274301No hitNo description
PROSITE profilePS5015712.653276303IPR007087Zinc finger, C2H2
SMARTSM003550.0034276298IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-6276302IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280278298IPR007087Zinc finger, C2H2
SMARTSM0035574348381IPR015880Zinc finger, C2H2-like
SMARTSM0035530386408IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MYSNNDNNGN IIPSSSSSSL PPPHDHAQTD HHYSTTTTTT TSLSSILYTL SILKHKVQQL  60
QSLAAILLSP PPAADDDQPE AAGSMAIAAG VNMYNAIQDI IAASSSMMVT FQQMGILSTT  120
ASTTDHNNIS NTIQDQWQQR LNKVINNPQP NFYSSSETVW FGTSGQDHHH HHEIYNNTTT  180
TTTNTSSSID NKDVINNTTS NTSSQDHRIM TLQSRDQRVD HHQNMTSCTL FPSDNTTTPL  240
VLKSGTKRSK NENDDNNNHF DIVELEAADL LAKYTHYCQV CGKGFKRDAN LRMHMRAHGD  300
EYKTSAALSN PTKNKINNTI MISSSGGCSS DWINHSNGMM MSLLPKKYSC PQEGCRWNKK  360
HAKFQPLKSM ICVKNHYKRS HCPKMYVCKR CSRKQFSVLS DLRTHEKHCG DLKWQCSCGT  420
TFSRKDKLMG HVALFVGHTP LTIVSSSTSS GIINNKSFKS VPLDQGSRSR HQITTQLPHH  480
DHK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5C2Z41e-156A0A2P5C2Z4_PARAD; TFIIH C1-like domain containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80993045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-88C2H2 family protein