PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G036454.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 247aa    MW: 27755.1 Da    PI: 9.4565
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G036454.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.2e-19132181255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            y+GVr+++ +g+W+AeIrdp+    r +r++lg+f tae Aaka+++a+ +++g
  HL.SW.v1.0.G036454.1 132 NYRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFETAELAAKAYDRAAIEFRG 181
                           59*******.**********82....48************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.75E-33131191No hitNo description
SuperFamilySSF541715.56E-22132191IPR016177DNA-binding domain
PROSITE profilePS5103225.014132189IPR001471AP2/ERF domain
PfamPF008479.8E-14132181IPR001471AP2/ERF domain
SMARTSM003801.6E-38132195IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-32132190IPR001471AP2/ERF domain
PRINTSPR003671.8E-11133144IPR001471AP2/ERF domain
PRINTSPR003671.8E-11155171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MSFPTFLRNV TVDEEHSIMV STLKYVICGE TDPGPTRPQR QVAQPLKSLQ IATSATNSTN  60
ESTLLMSFPD SDTCRVCKIN GCLGCNYFRS SNERAKTTTK TSPSSWSLSF ARTKASNDKN  120
NSGVVARKKK KNYRGVRQRP WGKWAAEIRD PRRAARVWLG TFETAELAAK AYDRAAIEFR  180
GSKAKLNFPM SEYENKNDDK CHNGLVTDTA VSNSQVGPQK NTSWENDSEF WDEVEGDWVR  240
MMNFHS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-25129190264ATERF1
3gcc_A9e-25129190264ATERF1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5ATD73e-81A0A2P5ATD7_PARAD; AP2/ERF transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29623072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.12e-37redox responsive transcription factor 1