PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G036444.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C3H
Protein Properties Length: 295aa    MW: 33424 Da    PI: 10.1277
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G036444.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH468.8e-15235259226
                           -S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                           kte+C+ +++tG+C+yGd C+FaHg
  HL.SW.v1.0.G036444.1 235 KTEICNKWQETGECPYGDHCQFAHG 259
                           9***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.3E-18229266IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-11231265IPR000571Zinc finger, CCCH-type
SMARTSM003569.2E-9233260IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.788233261IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-12235259IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-10267295IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6268295IPR000571Zinc finger, CCCH-type
SMARTSM003565.3271295IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.131271295IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MSSVIRRDAI AVSLITKCFK MQKYSTNGVV SSNSFFLGDD EFDSDSSITA VAVDDHRRRL  60
YNSLLVQDRQ EMVNRRSLCL NRLRQVSVEV TSLRTENSNL RSINVELNKQ FRLLFQSALQ  120
NRLGSRSVLS EKGFGEERQR TSPIDHSRLK KTVEAIDICS RLPKSISVKS EDYLKVSAQA  180
FVKNGGRSRD SSRSRTSATL QNIVKQKVNV GGGKKKENHG GNPVELDVYK QGALKTEICN  240
KWQETGECPY GDHCQFAHGV EELRPVIRHP RYKTQVCRMV LNGVVCPYGH RCHFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A9e-21235295565Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015876715.11e-84zinc finger CCCH domain-containing protein 15, partial
SwissprotQ9C9F51e-61C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A2P5DKE01e-118A0A2P5DKE0_PARAD; Zinc finger, CCCH-type
STRINGXP_009357366.13e-83(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.18e-61C3H family protein