PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G036129.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

FAR1

Protein Properties

Length: 680aa MW: 77887.8 Da PI: 7.8385

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G036129.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68	2.4e-21	62	155	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleH 85 +fY+e+Ak++GFs+r+++++ + + t+r fvC + g++ + ++++k +r+r+++r+gC+a ++++k + +w+vt + ++H HL.SW.v1.0.G036129.1 62 EFYSEFAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPIKASNESKPQRNRKSSRCGCQAYMRISKATelgGPEWRVTGFANHH 150 6************9998877356667999*************999****************9988788******* PP FAR1 86 nHela 90 nHel HL.SW.v1.0.G036129.1 151 NHELL 155 *96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.8E-18	62	155	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.2E-17	278	369	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.617	556	589	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.5E-5	560	587	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0056	564	591	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 680 aa Download sequence Send to blast
MSDEAGEMLV VYDDPSDHRS LSLDDTSSTA ESLDETRLSL ETTNDTIPYI GQRFSTHDAA 60 YEFYSEFAKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPIKASNE SKPQRNRKSS 120 RCGCQAYMRI SKATELGGPE WRVTGFANHH NHELLEPNQV RFLPAYRTIS ESDKSRILMF 180 AKTGISVQQM MRLMELEKCV EPGYLPFTEK DVRNLLQSFR KLDPEEESID LLRMCRNIKE 240 KDPNFKFEYT LDSNNRLENI AWSYASSIQA YDIFGDAVVF DTSHRLTVFD MPLGIWVGMN 300 NYGMPCFFGC VLLREESLRS FSWALKVFLG FMSGKAPQTI LTDQNMCLKE AISMELPTTK 360 HALCIWMIVA KFPSWFNAVL GERYNEWKGE FYRLYNLESI EDFELGWREM VNSFGLHSNR 420 HIINLYGLRS LWALPFLRSH FFAGLTTIGQ SKSINAFIQR FLGAQTRLAH FVEQAAAAVD 480 FKDQAGEQQT MQQNLQNICL KTGAPMESHA ASILTPYAFS KLQEQLVLAA HYASFQMEDG 540 FLVRHHTKAE GGRKVYWVPR EGIISCRCHH FEFSGILCRH SLRVLSTGNC FQIPDRYLPD 600 RWRRISTPSL KLLQNAPSDH GEKIQVLQSL VSTLVTESTK SKERLDMATE QVSILLSQVR 660 EQPVSLQTTR EIPSFHRNI*

Sequence ? help Back to Top

Protein Sequence Length: 680 aa Download sequence Send to blast

MSDEAGEMLV VYDDPSDHRS LSLDDTSSTA ESLDETRLSL ETTNDTIPYI GQRFSTHDAA  60
YEFYSEFAKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPIKASNE SKPQRNRKSS  120
RCGCQAYMRI SKATELGGPE WRVTGFANHH NHELLEPNQV RFLPAYRTIS ESDKSRILMF  180
AKTGISVQQM MRLMELEKCV EPGYLPFTEK DVRNLLQSFR KLDPEEESID LLRMCRNIKE  240
KDPNFKFEYT LDSNNRLENI AWSYASSIQA YDIFGDAVVF DTSHRLTVFD MPLGIWVGMN  300
NYGMPCFFGC VLLREESLRS FSWALKVFLG FMSGKAPQTI LTDQNMCLKE AISMELPTTK  360
HALCIWMIVA KFPSWFNAVL GERYNEWKGE FYRLYNLESI EDFELGWREM VNSFGLHSNR  420
HIINLYGLRS LWALPFLRSH FFAGLTTIGQ SKSINAFIQR FLGAQTRLAH FVEQAAAAVD  480
FKDQAGEQQT MQQNLQNICL KTGAPMESHA ASILTPYAFS KLQEQLVLAA HYASFQMEDG  540
FLVRHHTKAE GGRKVYWVPR EGIISCRCHH FEFSGILCRH SLRVLSTGNC FQIPDRYLPD  600
RWRRISTPSL KLLQNAPSDH GEKIQVLQSL VSTLVTESTK SKERLDMATE QVSILLSQVR  660
EQPVSLQTTR EIPSFHRNI*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024023562.1	0.0	protein FAR1-RELATED SEQUENCE 11
Refseq	XP_024023563.1	0.0	protein FAR1-RELATED SEQUENCE 11
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A251RL31	0.0	A0A251RL31_PRUPE; Uncharacterized protein
TrEMBL	M5XX99	0.0	M5XX99_PRUPE; Uncharacterized protein
STRING	EMJ26358	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]