PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G025856.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

NAC

Protein Properties

Length: 332aa MW: 36933.7 Da PI: 9.7367

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G025856.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	36.6	1.3e-11	16	55	1	41
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiyk 41 lppGfrFhPtdeel+++yL kkv ++++ + ++i evd++k HL.SW.v1.0.G025856.1 16 LPPGFRFHPTDEELISHYLYKKVVDTSFLC-RAIGEVDLNK 55 79***********************988.88*99986 PP
2	NAM	90.1	3.8e-28	54	119	63	129
NAM 63 krdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ++d+ky+tg r+nrat++gyWkatgkdke+++ +++lvg+kktLvfykgrapkgek++Wvmheyrle HL.SW.v1.0.G025856.1 54 NKDRKYPTGLRTNRATEAGYWKATGKDKEIYR-GKSLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 119 589***************************.999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	25.718	1	133	IPR003441	NAC domain
SuperFamily	SSF101941	8.37E-45	13	125	IPR003441	NAC domain
Pfam	PF02365	2.4E-24	17	118	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MANVIGTVKE DEQLDLPPGF RFHPTDEELI SHYLYKKVVD TSFLCRAIGE VDLNKDRKYP 60 TGLRTNRATE AGYWKATGKD KEIYRGKSLV GMKKTLVFYK GRAPKGEKSN WVMHEYRLEG 120 KFSVHNLPKT AKKSSGGKKI PITGLSRLSP FGNEMGSFGL PPLMDSSSPY SNKSKPVLHS 180 VNVPCFSSPM NNNNILRNQD ETTMDSLNIN SLYGVVSNSP STNVVLPRIP LPNSLYSAQN 240 AAVSSHMQFP NFLMVHHNNN NNNGDDQSIL RSLVENNGSN LRQIFKTERE TVMNSEVNTS 300 VMANLEMGRR PFGNQATASA GSVDMESFWN Y*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-34	13	118	14	142	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-34	13	118	14	142	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-34	13	118	14	142	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-34	13	118	14	142	NO APICAL MERISTEM PROTEIN
3swm_A	3e-34	13	118	17	145	NAC domain-containing protein 19
3swm_B	3e-34	13	118	17	145	NAC domain-containing protein 19
3swm_C	3e-34	13	118	17	145	NAC domain-containing protein 19
3swm_D	3e-34	13	118	17	145	NAC domain-containing protein 19
3swp_A	3e-34	13	118	17	145	NAC domain-containing protein 19
3swp_B	3e-34	13	118	17	145	NAC domain-containing protein 19
3swp_C	3e-34	13	118	17	145	NAC domain-containing protein 19
3swp_D	3e-34	13	118	17	145	NAC domain-containing protein 19
4dul_A	3e-34	13	118	14	142	NAC domain-containing protein 19
4dul_B	3e-34	13	118	14	142	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010093594.1	1e-153	NAC domain-containing protein 100
Swissprot	Q9FLJ2	1e-108	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2P5F6Z0	1e-170	A0A2P5F6Z0_TREOI; NAC domain containing protein
STRING	XP_010093594.1	1e-152	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-111	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]