PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G024741.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | WRKY | ||||||||
Protein Properties | Length: 351aa MW: 39472 Da PI: 6.2209 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 72.4 | 6.1e-23 | 160 | 221 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSST.TEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedp.kvveitYegeHnhe 59 dDg++WrKYGqK++ ++++pr+Y+rCt++ gC+++k+v++ +++p ++ +tY g+H+++ HL.SW.v1.0.G024741.1 160 DDGHAWRKYGQKVILNAKHPRNYFRCTHKfdqGCQATKQVQKIEDEPhQMYRTTYYGNHTCS 221 8***************************9999**********9988736899********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.0E-24 | 144 | 222 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 18.142 | 154 | 218 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.49E-23 | 155 | 221 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.7E-36 | 159 | 222 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.4E-24 | 160 | 220 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MVFDPLPEQN ALSSARRKVI HELVQGRDLA NQLHSLLSRS DQNDGVSAED LVSKIMDSFT 60 NTLFMLNTDN NSDQAAATAH GHGVGDNGDE ICDVDSRLQS STSRIDHSLC LEGRKSEDSQ 120 ESCRSTSVIS STTHLKDRRG SYKRRKTSHT MKRETSTLID DGHAWRKYGQ KVILNAKHPR 180 NYFRCTHKFD QGCQATKQVQ KIEDEPHQMY RTTYYGNHTC SSVSKLLAPE LILDCPSSPS 240 HGSSVLLSFN NADHNNNNFV SKQLLTHPFF SSVKQEFNDN NNYQTSSSDY NNNNIVSSDH 300 HDDNNRLTTA IDHRVQAAGL ESDDHHNDIH GDDEIGMDIF DDVLRSFQFE * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 1e-22 | 159 | 220 | 8 | 68 | OsWRKY45 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010098011.1 | 8e-89 | probable WRKY transcription factor 70 | ||||
TrEMBL | A0A2P5CHL3 | 1e-127 | A0A2P5CHL3_PARAD; WRKY domain containing protein | ||||
STRING | XP_010098011.1 | 3e-88 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1995 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56400.1 | 3e-44 | WRKY DNA-binding protein 70 |