PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G022846.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 228aa    MW: 25390 Da    PI: 9.0454
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G022846.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.6e-0983133355
                           HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                           ++h  +Er+RR+++ +  + Lr+llP  +    ++K s ++   +  +YIk+Lq
  HL.SW.v1.0.G022846.1  83 MKHRDIERQRRQEMATLHASLRSLLPLeL---IKGKRSISDHINEGARYIKQLQ 133
                           68*************************78...*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-1077149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.30E-778137No hitNo description
PROSITE profilePS5088811.85280132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-783133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-784148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MFPLHRSNEL CFQISPNPQK KKAIFSEDQI LGHASLEDNA FHVDNYKEII TTSRRSPKSF  60
PNTSTIVNHN SATISENKSN KMMKHRDIER QRRQEMATLH ASLRSLLPLE LIKGKRSISD  120
HINEGARYIK QLQLKIKELD AKRDDLKKYA YLSDSSSTEP TNHRHGQAGS STSCTPPPQG  180
HFLRVQPCGC GVEIVISSCE FGGLSALPLS KVLQVILEEG LALVSCI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024029681.18e-70transcription factor bHLH120 isoform X2
TrEMBLA0A2P5D9K21e-104A0A2P5D9K2_PARAD; Basic helix-loop-helix transcription factor
STRINGXP_010109067.12e-68(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.12e-35bHLH family protein