PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G022712.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | Trihelix | ||||||||
Protein Properties | Length: 314aa MW: 34673.2 Da PI: 10.3593 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 47.7 | 4.2e-15 | 62 | 144 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 +W++ v L+ea+++++ +r+klk+ +We+v++++ +++ ++++qCk+k+e+++kry+ + + + + ++p++++l HL.SW.v1.0.G022712.1 62 EWSEGAVSSLLEAYESKWVLRNRAKLKGLDWEDVARYVssraNSTKSPKTQTQCKNKIESMKKRYRSESTADAS-------SWPLYSRL 143 5*************************************88777778889999**************99988876.......48988888 PP trihelix 86 e 86 + HL.SW.v1.0.G022712.1 144 D 144 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 8.4E-18 | 60 | 144 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MDKETNNHYH HHHQESPSLL PNTTTAVAAS ATAITVIPKE ESPRKPLSGG GGGGGDRLKR 60 DEWSEGAVSS LLEAYESKWV LRNRAKLKGL DWEDVARYVS SRANSTKSPK TQTQCKNKIE 120 SMKKRYRSES TADASSWPLY SRLDLLLRGN GVPPTAAASA AVADDTGGIN KMLISDHASD 180 KNINNNSMDI TSDSSTPALY SEKTEKIRSS SRKAGTAVNK IMKRKRKKKR KEELEVAESI 240 RWLAEAVLKS EQARMEAMRE IERMRVEAEA KRAEMELKRT QIIANTQLEI AKLFASAVHV 300 GKAVDSSLRI GRN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 221 | 228 | MKRKRKKK |
2 | 222 | 230 | KRKRKKKRK |
3 | 223 | 227 | RKRKK |
4 | 223 | 231 | RKRKKKRKE |
5 | 224 | 230 | KRKKKRK |
6 | 225 | 231 | RKKKRKE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027342812.1 | 1e-118 | trihelix transcription factor ASIL1-like | ||||
TrEMBL | A0A2P5BX03 | 1e-153 | A0A2P5BX03_PARAD; Trihelix transcription factor | ||||
STRING | XP_009372813.1 | 1e-114 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4994 | 33 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54390.1 | 6e-78 | sequence-specific DNA binding transcription factors |