PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G018372.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | TALE | ||||||||
Protein Properties | Length: 511aa MW: 57210.5 Da PI: 6.451 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 25.8 | 1.8e-08 | 438 | 476 | 18 | 54 |
HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +F++ ++yp+ +e+ LA k gLt +qV++WF N R + HL.SW.v1.0.G018372.1 438 MFQNflHPYPKDAEKHLLAVKSGLTRNQVSNWFINARVR 476 5887779******************************88 PP | |||||||
2 | BELL | 77.8 | 1.6e-25 | 308 | 376 | 2 | 71 |
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 r++ + k+akLlsll+ Vd+rY+q+ ++++tv+s+F+a+++l++ ++++++Al++iS ++ L+++i+++ HL.SW.v1.0.G018372.1 308 RRQFETKRAKLLSLLQLVDDRYNQCLDEIHTVVSAFHAATELDP-QIHARFALQTISVLYKGLRERISKH 376 678899**************************************.**********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 3.4E-32 | 237 | 375 | IPR006563 | POX domain |
Pfam | PF07526 | 5.5E-29 | 242 | 374 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.078 | 417 | 480 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-5 | 420 | 484 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.95E-10 | 420 | 481 | No hit | No description |
SuperFamily | SSF46689 | 3.08E-15 | 422 | 488 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-25 | 423 | 486 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.1E-14 | 437 | 476 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 511 aa Download sequence Send to blast |
MENNQAFNIT QEMIMTSRND LTAMNSSFVL QSYLDDFSYS NPLFYSYKRS FSRDEASSLG 60 GVGSSSSAMC TSTELQEEAA KFMAAKAAAA AGHGLQENLN NLAISVPQMY SSDDVISGFV 120 SNENNNNSYV TYNNQWGDVE LVGKTSEFHQ TFDPNVWNSN NNHNGSSDFS NELSLSLATS 180 QPSVITGMAT TIPSQCSDMS RSAALPARNT ETVLVSEQTS CNNNKVLSPS FGSYRPLQLS 240 QVISGSRYLS AAQEILAHFA SFSLENIGHD HSSSSYLMNS CSLSTMSPMD STSDGGRLEG 300 ETESESHRRQ FETKRAKLLS LLQLVDDRYN QCLDEIHTVV SAFHAATELD PQIHARFALQ 360 TISVLYKGLR ERISKHCLAM GATSFDQFGR ESSGSDKSFE TSFIQKQWAL QQLKKKDQLW 420 RPQRGLPERS VSVLRAWMFQ NFLHPYPKDA EKHLLAVKSG LTRNQVSNWF INARVRLWKP 480 MIEEMYAELN RRKENNNNNN NNINQIQRYN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 2e-14 | 426 | 484 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 2e-14 | 426 | 484 | 5 | 63 | Homeobox protein Meis2 |
4xrm_A | 2e-14 | 426 | 484 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 2e-14 | 426 | 484 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010097078.2 | 0.0 | homeobox protein ATH1 | ||||
Refseq | XP_024021825.1 | 0.0 | homeobox protein ATH1 | ||||
Swissprot | P48731 | 1e-106 | ATH1_ARATH; Homeobox protein ATH1 | ||||
TrEMBL | W9RE35 | 0.0 | W9RE35_9ROSA; Homeobox protein ATH1 | ||||
STRING | XP_010097078.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5939 | 32 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32980.1 | 1e-97 | homeobox gene 1 |
Publications ? help Back to Top | |||
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