PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G017664.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

bZIP

Protein Properties

Length: 303aa MW: 34474.8 Da PI: 5.2928

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G017664.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	39	1.7e-12	70	109	4	43
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 k++rr+++NReAAr+sR+RKka++++Le +L + + HL.SW.v1.0.G017664.1 70 NKVQRRLAQNREAARKSRLRKKAYVQQLESSRMKLAQLEQ 109 699**************************86555554443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.1E-6	67	136	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.404	69	113	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	7.4E-9	71	115	No hit	No description
SuperFamily	SSF57959	4.06E-7	71	114	No hit	No description
Pfam	PF00170	6.1E-9	71	111	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	74	89	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.2E-27	153	227	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MGIYEPFRQV PMAMWKNSFE NGSNNILYTG NSTIVEEVVP RQETKIKFMS HESAGPSEND 60 QEANKSTDDN KVQRRLAQNR EAARKSRLRK KAYVQQLESS RMKLAQLEQE LERSRNQGAA 120 FLGSNNSASL NSEMAAFEIK YGYWVEELNR QNSELRNALQ ARVPSDVELG MLVENGLNHY 180 YSLFQMKEVA AKSDIFYLMS GIWRTSAERF FLWIGGFRPS DLLKVVMPHI EPMNDQQVAR 240 VNSLRQSSQQ AEDALSQGID KLHQNLAFNM AADPITETAY ESLMADAIEK LDALEIFVTQ 300 EK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12953119}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010105854.2	1e-149	transcription factor TGA7 isoform X2
Refseq	XP_024027637.1	1e-149	transcription factor TGA7 isoform X2
Refseq	XP_024027638.1	1e-149	transcription factor TGA7 isoform X2
Refseq	XP_024027639.1	1e-149	transcription factor TGA7 isoform X3
Swissprot	Q93ZE2	1e-106	TGA7_ARATH; Transcription factor TGA7
TrEMBL	A0A2P5G221	1e-163	A0A2P5G221_TREOI; Basic-leucine zipper transcription factor
STRING	XP_010105854.1	1e-149	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1096	34	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77920.1	1e-108	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]