PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G017484.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | MYB | ||||||||
Protein Properties | Length: 249aa MW: 28786.8 Da PI: 4.6349 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.7 | 1.9e-16 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W +eEde+l+ vk++G ++W++ a+ g++R++k+c++rw++yl HL.SW.v1.0.G017484.1 16 KGTWHEEEDERLISFVKLMGEKRWDALAEASGLRRSGKSCRLRWLNYL 63 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.6 | 2.1e-16 | 73 | 114 | 5 | 48 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++eE+ +++++++++G++ W++Iar ++ gRt++++k++w++yl HL.SW.v1.0.G017484.1 73 SAEEETIILKLHERWGNK-WSKIARILP-GRTDNDIKNYWRTYL 114 89****************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.652 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.79E-27 | 14 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.5E-14 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-14 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-20 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.45E-9 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 25.253 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 2.3E-14 | 68 | 116 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-23 | 71 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.74E-10 | 73 | 114 | No hit | No description |
Pfam | PF00249 | 1.0E-14 | 73 | 114 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MDFQIGAMQG EHQLRKGTWH EEEDERLISF VKLMGEKRWD ALAEASGLRR SGKSCRLRWL 60 NYLRPNLKHD QISAEEETII LKLHERWGNK WSKIARILPG RTDNDIKNYW RTYLRKKLAK 120 VEEEIKSEYG LEKGKEHSSS TSTATADHKI WNCDADQYDE DLWGSKSSSW DGCSDGSGLS 180 ADFELTSSPY ENRLSDYWIS LSVLSNEEDS SEMKCYDECN SMVDPYWTVP DDDPCDTWNS 240 SGSLWDMN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-26 | 13 | 118 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00406 | DAP | Transfer from AT3G53200 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007027459.1 | 1e-71 | PREDICTED: transcription factor MYB59 isoform X2 | ||||
Refseq | XP_017976688.1 | 1e-71 | PREDICTED: transcription factor MYB59 isoform X1 | ||||
Refseq | XP_022767268.1 | 1e-71 | transcription factor MYB27-like | ||||
Refseq | XP_022767269.1 | 1e-71 | transcription factor MYB27-like | ||||
TrEMBL | A0A2P5BJP9 | 1e-105 | A0A2P5BJP9_PARAD; MYB transcription factor | ||||
TrEMBL | A0A2P5FVF9 | 1e-105 | A0A2P5FVF9_TREOI; MYB transcription factor | ||||
STRING | XP_010098805.1 | 2e-83 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13169 | 26 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53200.1 | 1e-50 | myb domain protein 27 |