PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G011998.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | B3 | ||||||||
Protein Properties | Length: 150aa MW: 16913.5 Da PI: 7.5166 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 38 | 2.8e-12 | 65 | 122 | 38 | 96 |
EEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 38 ledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 + + +g++W++ + +++ + + W++F+++n+Lk gD +vF+l+++s+++lv++v HL.SW.v1.0.G011998.1 65 VLTYKGKKWTMLF--NGTNVVmKRFDNSWRNFAEDNKLKIGDACVFELTENSSRNLVFRV 122 56779********..44442235577***********************99999999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.0E-14 | 28 | 126 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-13 | 28 | 126 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.32E-13 | 30 | 126 | No hit | No description |
PROSITE profile | PS50863 | 11.434 | 32 | 128 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.6E-4 | 36 | 128 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-10 | 64 | 122 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MSNTSSNLST SNEEEQVSQD DEFWPLSGKP FFSVFIAKTH VKPTYRLVLP TKIHPVLPSL 60 IIPAVLTYKG KKWTMLFNGT NVVMKRFDNS WRNFAEDNKL KIGDACVFEL TENSSRNLVF 120 RVQILRGDIP SELLPKIVGE SLESPIVIE* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010097681.1 | 6e-58 | B3 domain-containing protein Os04g0386900 | ||||
TrEMBL | A0A2P5DI43 | 6e-64 | A0A2P5DI43_TREOI; B3 DNA binding domain containing protein | ||||
STRING | XP_010097681.1 | 2e-57 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9722 | 26 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 2e-08 | B3 family protein |