PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G009297.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

Trihelix

Protein Properties

Length: 435aa MW: 48233 Da PI: 9.1002

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G009297.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	51.2	3.4e-16	22	114	2	74
trihelix 2 WtkqevlaLiearremeerlrrg.k...................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 Wt +e++ Liea++ ++er ++ ++ +W++v ++++++g++rs++qC++kw+nl ++ykk+++ e+k HL.SW.v1.0.G009297.1 22 WTVSETMILIEAKKMDDERRMKRiTgndndqarssgsttptsnkPAELRWKWVEDYCWRKGCSRSQNQCNDKWDNLMRDYKKVRDYERK 110 ***********96555555421122445555666666776669999*************************************99 PP trihelix 71 rtse 74 +++ HL.SW.v1.0.G009297.1 111 IAEK 114 7544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.713	14	98	IPR017877	Myb-like domain
Pfam	PF13837	1.4E-12	21	110	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MADQGTNTSS TTLLRDYRKG NWTVSETMIL IEAKKMDDER RMKRITGNDN DQARSSGSTT 60 PTSNKPAELR WKWVEDYCWR KGCSRSQNQC NDKWDNLMRD YKKVRDYERK IAEKSAGGGE 120 DQSYWKIEKN ERKERNLPTN MLPQIYEALV DVVERKSQRL SGGICGVSSI PSSSPSIGYQ 180 MVERTMSSGG GGVHHHPPHH QLQQTPLMSS QALLMQSHHI SATPITALPL PPPSVTVTVA 240 EVAVAPPPPV QVRAQQPPLA LPYSQPIILP TVDSDTSEHP HSPAKRRRKG PEQPYHLHPH 300 PHHHHPLQPQ PQSQPQTQPH QGPVPPPTTS GSGRLISSST ANISPTSSDH QQQVVATAIS 360 KSASIIAEAL HACEEGEQKR HEDLLSLHER RLEIEKSKNE VNRQGINGLV EAINKLANSI 420 QALASDHRNQ STSK*

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MADQGTNTSS TTLLRDYRKG NWTVSETMIL IEAKKMDDER RMKRITGNDN DQARSSGSTT  60
PTSNKPAELR WKWVEDYCWR KGCSRSQNQC NDKWDNLMRD YKKVRDYERK IAEKSAGGGE  120
DQSYWKIEKN ERKERNLPTN MLPQIYEALV DVVERKSQRL SGGICGVSSI PSSSPSIGYQ  180
MVERTMSSGG GGVHHHPPHH QLQQTPLMSS QALLMQSHHI SATPITALPL PPPSVTVTVA  240
EVAVAPPPPV QVRAQQPPLA LPYSQPIILP TVDSDTSEHP HSPAKRRRKG PEQPYHLHPH  300
PHHHHPLQPQ PQSQPQTQPH QGPVPPPTTS GSGRLISSST ANISPTSSDH QQQVVATAIS  360
KSASIIAEAL HACEEGEQKR HEDLLSLHER RLEIEKSKNE VNRQGINGLV EAINKLANSI  420
QALASDHRNQ STSK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024022806.1	1e-132	uncharacterized protein LOC21408586
TrEMBL	A0A2P5CN85	1e-174	A0A2P5CN85_PARAD; Myb-like domain containing protein
STRING	XP_010098471.1	1e-135	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6804	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	1e-60	Trihelix family protein