PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G007647.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C3H
Protein Properties Length: 567aa    MW: 61968.2 Da    PI: 7.3638
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G007647.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.93.1e-07140160526
                           --SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           +C+ f++ G C++Gd C +aHg
  HL.SW.v1.0.G007647.1 140 PCPEFRK-GACRRGDMCEYAHG 160
                           8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003569.5E-6135161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.981140162IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-5140160IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-4168198IPR000571Zinc finger, CCCH-type
SMARTSM0035638170193IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MAMLQDVKLA LEELLKTNGS AIERTLTVST RTVNSSSPTL SSSSENGSPL GQDFISSPSR  60
SKFIDYPVSS VSEKKEYPVD PSLPDIKNSI YSTDEFRMYS FKVRPCSRAY SHDWTECPFV  120
HPGENARRRD PRKFHYSCVP CPEFRKGACR RGDMCEYAHG VFECWLHPAQ YRTRLCKDGT  180
SCARRVCFFA HTPEELRPLY VSTGSAVPSP RTGTSGAAAM DFAAAMNMLP GSPSSMSVMS  240
PSPFTPPISP SANGMPHASV GWPQPNVPAL HLPGSNLQSS RLRSSLHARD IPAEGFDLLS  300
DFEMQQQQQL LNELSCLSQP SLSSNSLNRS GRLKTLTPSN LDDLFSAESS SPRYSDQGLP  360
SAVFSPTHKS AVINQFQQQQ TMLSPINTNF SPKNDHPLMH QSSFGVPSSG RMSPRNMEPI  420
SPMGSRVSML AQRDKQQFRS LSSRELGSNS ASIVGSPVNS WSKWGSSNGK PDWAVSTDEL  480
GKHRRSSSFE LGNNGEEPDL SWVQSLVKES PTEMKEKSTA SVSGVSASTS SNEGSNVNPQ  540
MEGVDHAVLG AWLEQMQLDH LVAQQN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024019118.10.0zinc finger CCCH domain-containing protein 30 isoform X2
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A314XWL00.0A0A314XWL0_PRUYE; Zinc finger CCCH domain-containing protein 30
STRINGXP_010092985.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]