PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G002926.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family B3
Protein Properties Length: 457aa    MW: 50828.4 Da    PI: 8.5244
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G002926.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.51.7e-2094184199
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           f+k l++s+v +  ++ lp +f+++h  +  +++t+tlede+g+++ vk+i  k++    l++GW++F  a++L egD++vF+l++ ++
  HL.SW.v1.0.G002926.1  94 FVKSLVRSHVASCFWMGLPGPFCKSHLPD--KDTTITLEDEDGKRYHVKYIAYKTG----LSAGWRQFSVAHKLLEGDVLVFQLVEPTK 176
                           89************************534..5679***************666665....9**********************987666 PP

                           E..EEEEE-S CS
                    B3  90 felvvkvfrk 99 
                           f  +v v+r+
  HL.SW.v1.0.G002926.1 177 F--KVYVIRA 184
                           6..8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.5E-2287185IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-2488185IPR015300DNA-binding pseudobarrel domain
CDDcd100173.43E-2892183No hitNo description
PfamPF023621.6E-1794184IPR003340B3 DNA binding domain
PROSITE profilePS5086313.71994185IPR003340B3 DNA binding domain
SMARTSM010191.1E-2394185IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
LWIGGVEEEV TRPRAGEEVV EDFHGNGIAK KKILKEKEEE PCIAKKRNPD VQINSPKPSK  60
VAIHASPLSG EAKSSAVMRG QEVRSNLETE FPSFVKSLVR SHVASCFWMG LPGPFCKSHL  120
PDKDTTITLE DEDGKRYHVK YIAYKTGLSA GWRQFSVAHK LLEGDVLVFQ LVEPTKFKVY  180
VIRANDLTEV DGALGLLNLD CQSKQSGAEL GAIECYNTNR KRPKSLPLSV VEKKKKKKDV  240
SSRSAPPKPA DQSENDSDEV ASEVLEGSKL LGPAIQFKDI KSFKNFSILV DGLLVDSEIP  300
EDIRKAYYKL CCSKKAFLHE NIIKGMNHKL IVGIITETVN VASAIKACKL TTSLSDFAAW  360
DKSLKAFELL GMNVGFLRAR LSHLTGLAID SEVCVDARKY AQSRKERADV ETGMKDIETK  420
IVELRDACVR FDAAIDKLGS QAETYERKFH REVKASW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219237RKRPKSLPLSVVEKKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024020017.10.0B3 domain-containing protein Os01g0234100 isoform X2
TrEMBLA0A2P5FYB60.0A0A2P5FYB6_TREOI; B3 DNA binding domain containing protein
STRINGXP_010094372.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.17e-38B3 family protein