PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G002270.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

bZIP

Protein Properties

Length: 489aa MW: 54315.9 Da PI: 6.5583

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G002270.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.7	6.9e-10	200	238	5	43
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 k rr+++NReAAr+sR+RKka++++Le L++ + HL.SW.v1.0.G002270.1 200 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLRLSQLEQ 238 788*************************86666655554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.7E-9	196	267	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	7.3E-8	197	243	No hit	No description
PROSITE profile	PS50217	9.404	198	242	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	1.1E-6	198	242	IPR004827	Basic-leucine zipper domain
CDD	cd14708	5.18E-23	200	252	No hit	No description
SuperFamily	SSF57959	9.38E-7	200	243	No hit	No description
PROSITE pattern	PS00036	0	203	218	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	5.0E-31	285	357	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009909	Biological Process	regulation of flower development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence Send to blast
MQSFRAAPSN PQLYTHSSFY FRGDECSRNQ TRFSDLGELE HSAAAFPHDD AVDLSPSSIF 60 SLKSNNIAVL PNNLHLGAFN PSAVCLDIAP TTTGTSCVDT GQAQGQGQGL QQQQQQLVYH 120 HHHLQQQQQK PTKVVVSPLG SGHFENWGDS AMADNSQQTD TSTDVDTDDK NHFQGMQHAS 180 LVVVDSMEDQ SAKVITGDQK TLRRLAQNRE AARKSRLRKK AYVQQLESSR LRLSQLEQEL 240 QRARQQGMFI ASGFSGDHNQ LMAGNGALAF DLDYARWLDE QQRLINDLRS AVNSHMGDNE 300 LRVLVDGVMA HYDEIFRLKS IGAKADVFHM LSGMWKTPAE RCFMWLGGFR SSEVLKIQIL 360 GNHLEPLTDQ QLLGICNLQQ SSQQAEDALS QGMEALQQSL VETLSSATLG PAGSGNVADY 420 MGQMAIAMGK LATLENFLYQ ADLLRQQTLQ QMHRILTTRQ AARALLVIND YFSRLRALSS 480 LWLARPRE*

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence Send to blast

MQSFRAAPSN PQLYTHSSFY FRGDECSRNQ TRFSDLGELE HSAAAFPHDD AVDLSPSSIF  60
SLKSNNIAVL PNNLHLGAFN PSAVCLDIAP TTTGTSCVDT GQAQGQGQGL QQQQQQLVYH  120
HHHLQQQQQK PTKVVVSPLG SGHFENWGDS AMADNSQQTD TSTDVDTDDK NHFQGMQHAS  180
LVVVDSMEDQ SAKVITGDQK TLRRLAQNRE AARKSRLRKK AYVQQLESSR LRLSQLEQEL  240
QRARQQGMFI ASGFSGDHNQ LMAGNGALAF DLDYARWLDE QQRLINDLRS AVNSHMGDNE  300
LRVLVDGVMA HYDEIFRLKS IGAKADVFHM LSGMWKTPAE RCFMWLGGFR SSEVLKIQIL  360
GNHLEPLTDQ QLLGICNLQQ SSQQAEDALS QGMEALQQSL VETLSSATLG PAGSGNVADY  420
MGQMAIAMGK LATLENFLYQ ADLLRQQTLQ QMHRILTTRQ AARALLVIND YFSRLRALSS  480
LWLARPRE*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269\|PubMed:19395638, ECO:0000269\|PubMed:19395639, ECO:0000269\|PubMed:9990857}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015895683.1	0.0	transcription factor TGA2.3 isoform X2
Swissprot	Q9SX27	0.0	PAN_ARATH; Transcription factor PERIANTHIA
TrEMBL	A0A2P5ENB3	0.0	A0A2P5ENB3_TREOI; Basic-leucine zipper transcription factor
STRING	EOY02112	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6022	31	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	1e-148	bZIP family protein

Publications ? help Back to Top
Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control. Front Plant Sci, 2011. 2: p. 79 [PMID:22645551] Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Wynn AN,Seaman AA,Jones AL,Franks RG Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development. Front Plant Sci, 2014. 5: p. 130 [PMID:24778638] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] de Luis Balaguer MA, et al. Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640 [PMID:28827319]