PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G001346.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | WRKY | ||||||||
Protein Properties | Length: 385aa MW: 42344.4 Da PI: 6.2629 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 107.2 | 8.3e-34 | 201 | 258 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCtsa+C+vkk+vers +dp+vv++tYeg+H+h+ HL.SW.v1.0.G001346.1 201 EDGYRWRKYGQKAVKNSPFPRSYYRCTSASCNVKKRVERSYTDPSVVVTTYEGQHTHP 258 8********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038130 | 7.0E-99 | 16 | 384 | IPR017396 | PWRKY transcription factor, group IIc |
Gene3D | G3DSA:2.20.25.80 | 1.0E-34 | 185 | 260 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.48E-29 | 192 | 260 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.202 | 195 | 260 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.8E-40 | 200 | 259 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-26 | 201 | 258 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009624 | Biological Process | response to nematode | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MEMKREMSNT TTTTTKDNNM MGSSSLSDII SNGSFPMFSS TNTFEPSSDF GAENKGSTLG 60 FMELLGVNDY FTIPPSSFFD FPALLASNTT TSTITTTAVP PLTIPKKEVS SDALNSNNNN 120 QPATPNTSSI SSASSDALNE EQTKPADPEE EEEEDEGEED EEEEQPAKTT NKQLKAKKTN 180 QKKQREPRFA FMTKSEVDHL EDGYRWRKYG QKAVKNSPFP RSYYRCTSAS CNVKKRVERS 240 YTDPSVVVTT YEGQHTHPSP LISRPTHTAA ADHPAAAFAN IPFHRSSGHH HQLPHQYQFM 300 TDHHHLLSSP SPSPSPASLP SNHNSFANYS NIISHINSNN NGSTTNAAAA FLHERRFCNP 360 SPGPALIPDH GLLQDIVTSN MRTN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 8e-26 | 193 | 260 | 10 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 8e-26 | 193 | 260 | 10 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00069 | PBM | Transfer from AT2G47260 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021654615.1 | 1e-90 | probable WRKY transcription factor 23 isoform X1 | ||||
Swissprot | O22900 | 6e-65 | WRK23_ARATH; WRKY transcription factor 23 | ||||
TrEMBL | A0A2P5B869 | 1e-103 | A0A2P5B869_TREOI; WRKY domain containing protein | ||||
STRING | XP_009367202.1 | 4e-87 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1002 | 34 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47260.1 | 4e-46 | WRKY DNA-binding protein 23 |
Publications ? help Back to Top | |||
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