PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.013G179400.1 | ||||||||
Common Name | B456_013G179400, LOC105783685 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 764aa MW: 81962.7 Da PI: 6.2765 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 104.7 | 4.8e-33 | 274 | 331 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers d++++ei+Y+g Hnh+k Gorai.013G179400.1 274 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSL-DGQITEIIYKGAHNHPK 331 7****************************************.***************85 PP | |||||||
2 | WRKY | 101.6 | 4.5e-32 | 492 | 550 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Cts+gCpv+k+ver++++ k+v +tY g+Hnhe Gorai.013G179400.1 492 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSPGCPVRKHVERASHNLKCVLTTYDGKHNHE 550 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.2E-29 | 264 | 332 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.548 | 268 | 332 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.05E-26 | 269 | 332 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.4E-37 | 273 | 331 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.5E-25 | 274 | 330 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.7E-35 | 477 | 552 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.31E-27 | 485 | 552 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 36.965 | 487 | 552 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.0E-36 | 492 | 551 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.6E-24 | 493 | 550 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 764 aa Download sequence Send to blast |
MDHNVTVFTN RQESVTADDG NGESETVNHG CGGGDGDGDG GGDGGKSGVS IAERRAATCG 60 FKVDKINTAR FRASTSPLAS PPVRLPYLTI PPGISPTALL DSPIMLPNAQ GSPTTGTFPV 120 PTLNQDGQVL SVSNTDRGSK IAPSFTFKPQ SMDSQPSFSS LEDQVSSSLN LVQRAEVDYQ 180 PLVHLGTPLD FEFPAEFSKE ATSRSFAADS VAEVKVLNNI VNDNVNLGCH PSELAGDRTS 240 MQKVPFNGQD VSTNLSESDP KGTNTTAGTA RTSEDGYNWR KYGQKQVKGS EYPRSYYKCT 300 HPNCQVKKKV ERSLDGQITE IIYKGAHNHP KPQPCRPSLG SSSSSNEMSE SAEGNGTCVK 360 IESGLIWKNT QAGSKDIKLG SDLRADGLER TSSTSVITDL SDPLSTAQGK SVGVFESADT 420 PEFSSTLASN DDDNDDRATQ GSISLCDDAA NDDESESKRR KTESCSTEMN VASGAIREPR 480 VVVQIESEVD ILDDGYRWRK YGQKVVKGNP NPRSYYKCTS PGCPVRKHVE RASHNLKCVL 540 TTYDGKHNHE VPAARSSSHV NTSACNLPPT VPNSQAALAL SRNSHVLKPE TPIQDIAPPF 600 DRKPEFKIEY MRPSFLGDFS NEMKLGTASL ASVYQMKFPS LQKAIPYGTF GLNPNCIATR 660 SSGSIASTVP NFPISMPLNL PTSANLSLAG FDINNGGKPA APIHSFLPGQ QFKENAARFH 720 GIKQELKDDN HYDPCLPIVD HASATSSSSS SVYRQQATGN FPS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-34 | 262 | 553 | 1 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 5e-34 | 262 | 553 | 1 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY331171 | 0.0 | AY331171.2 Theobroma cacao WRKY 11 (tcw11) gene, tcw11-1 allele, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012464728.1 | 0.0 | PREDICTED: probable WRKY transcription factor 2 | ||||
Refseq | XP_012464729.1 | 0.0 | PREDICTED: probable WRKY transcription factor 2 | ||||
TrEMBL | A0A0D2U396 | 0.0 | A0A0D2U396_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.013G179400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17370 | 6 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56270.1 | 1e-108 | WRKY DNA-binding protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.013G179400.1 |
Entrez Gene | 105783685 |
Publications ? help Back to Top | |||
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