PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G133000.1

Common Name

B456_010G133000

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 145aa MW: 16833.3 Da PI: 9.7542

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G133000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	44	2.8e-14	3	51	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k ien r + fskRr+gi KK + LS+LC+ e + iifs+ gk y + Gorai.010G133000.1 3 KIIENADDRLIAFSKRRTGIYKKISKLSTLCAGENLFIIFSPAGKPYSF 51 579*****************************************98877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	18.11	1	55	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.7E-9	2	54	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	8.5E-18	2	75	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.3E-16	5	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-6	17	32	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-6	32	53	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence Send to blast
MIKIIENADD RLIAFSKRRT GIYKKISKLS TLCAGENLFI IFSPAGKPYS FGHPSVESVA 60 KRFSNASQHL EETTDAPIET YHKERINLLV QYFKDVQDQL DVIKVKQKEI ALAKRSNGTK 120 IRYWWKAPID QLNLRELYEQ DERST

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016681299.1	6e-86	PREDICTED: agamous-like MADS-box protein AGL62
TrEMBL	A0A0D2R797	1e-103	A0A0D2R797_GOSRA; Uncharacterized protein (Fragment)
STRING	Gorai.010G133000.1	1e-104	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04100.1	3e-27	AGAMOUS-like 57

Link Out ? help Back to Top
Phytozome	Gorai.010G133000.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]