PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G219100.1 | ||||||||
Common Name | B456_009G219100, LOC105767479 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 385aa MW: 42281.8 Da PI: 4.4887 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.7 | 2.7e-10 | 302 | 342 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq Gorai.009G219100.1 302 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 342 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.926 | 292 | 341 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.63E-14 | 292 | 358 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.8E-12 | 297 | 352 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.1E-11 | 298 | 347 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.75E-12 | 301 | 346 | No hit | No description |
Pfam | PF00010 | 1.5E-7 | 302 | 342 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MESVAAFHDG PWDSFNIMFS NEDHLDFTHQ VLNQFSFPLE HDERLSFINP STFAPNLEAD 60 MSIAGVSQSL FSSSNALDSH FHYKTQESNQ SSNSSSNTFV PLPNYETSFL GGSSHMAVTN 120 DITMSLDIQM DIGGGSDKIT DSFPPAFPNI AMDDTVNVIE DSSTDCLPKL DGGYPADSAV 180 LADEILLKRQ FDVLELHDEG DKISTYSSET TKKRPRVSKD AAKAWNNVQL KKNNLNGSEE 240 STIGSDGQSS STSSSDDDNV CRDTNEVALA TSDPKASQAV DLNGKKRASR GSATDPQSLY 300 ARKRRERINE RLRILQNLVP NGTKVDISTM LEEAVHYVKF LQLQIKLLSS DELWMYAPIA 360 YNGVDIGLND KICTLLLPSK MQLG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 284 | 304 | KKRASRGSATDPQSLYARKRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012442484.1 | 0.0 | PREDICTED: transcription factor ABORTED MICROSPORES | ||||
TrEMBL | A0A0D2TTM0 | 0.0 | A0A0D2TTM0_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G219100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20024 | 4 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14760.1 | 2e-42 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G219100.1 |
Entrez Gene | 105767479 |
Publications ? help Back to Top | |||
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