PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G090000.1
Common NameB456_009G090000
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 400aa    MW: 44217 Da    PI: 8.1818
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G090000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.33.4e-07236258123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C+ Cgk F+r  nL+ H+r H
  Gorai.009G090000.1 236 HYCQVCGKGFKRDANLRMHMRAH 258
                         68*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.34E-6234261No hitNo description
SMARTSM003550.0034236258IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.1E-7236261IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.653236263IPR007087Zinc finger, C2H2
PROSITE patternPS000280238258IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.1E-7294299IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035577296329IPR015880Zinc finger, C2H2-like
SMARTSM0035540334356IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MISGSASCFP SASQGSPMYP LAEENMVPSS LEAGSGSGPD QSHSTTLLYN LSILKDKVHE  60
AQSLVSILIS PDQAHPESTS LAVSSMDSLV QDIIVTASSM IFICQQMSLG TASGNNINTE  120
LHQQHVRVIP DNRISQPPNF SDICVGNIVQ EKGQSFYYSA ETISWYGDHC NNDRNNNNGN  180
NRNRSLQVSN DDKLERKEFV ELPRRSEISG GCEAVSAMKY DIIELDAEDL LAKYTHYCQV  240
CGKGFKRDAN LRMHMRAHGD EYKSSAALIN PMKNPREGSS SSSAMGNCST KMNKKYSCPQ  300
EGCRWNQKHA KFQPLKSMIC VKNHYKRSHC PKMYVCKRCN CKQFSVLSDL RTHEKHCGDL  360
KWQCSCGTTF SRKDKLMGHV ALFVGHTPAL VTNPKANPG*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012444703.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
TrEMBLA0A0D2UIN60.0A0A0D2UIN6_GOSRA; Uncharacterized protein
STRINGGorai.009G090000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57522547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-112C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]