PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G287100.1
Common NameB456_008G287100, LOC105765640
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 293aa    MW: 33154.1 Da    PI: 7.3098
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G287100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.6e-173380148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT eEd  lv++++++G g+W+  a++ g++Rt+k+c++rw++yl
  Gorai.008G287100.1 33 RGPWTIEEDSVLVHYIARHGEGRWNFLAKHAGLRRTGKSCRLRWLNYL 80
                        89********************************************97 PP
2Myb_DNA-binding53.74.9e-1786129146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ T+eE+ l+++++ +lG++ W++Ia++++ gRt++++k++w++
  Gorai.008G287100.1  86 RGNLTAEEQFLILELHSKLGNR-WSKIAQHLP-GRTDNEIKNYWRT 129
                         7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.7122880IPR017930Myb domain
SuperFamilySSF466894.9E-3131127IPR009057Homeodomain-like
SMARTSM007171.5E-133282IPR001005SANT/Myb domain
PfamPF002495.3E-163380IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-233487IPR009057Homeodomain-like
CDDcd001671.42E-103580No hitNo description
PROSITE patternPS0017504857IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
PROSITE profilePS5129425.04981135IPR017930Myb domain
SMARTSM007172.6E-1585133IPR001005SANT/Myb domain
PfamPF002491.6E-1586129IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-2488134IPR009057Homeodomain-like
CDDcd001679.84E-1290129No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MTSPSSSSSS SLKKTSTSCS EDEGDHHQQQ LRRGPWTIEE DSVLVHYIAR HGEGRWNFLA  60
KHAGLRRTGK SCRLRWLNYL KPDVKRGNLT AEEQFLILEL HSKLGNRWSK IAQHLPGRTD  120
NEIKNYWRTR VQKQARQLNI DANSAAFKNI LRYYWMPRLV QKMEESSSPC FSTTVIPRNQ  180
PLMKTDYVDG NSCVSSLEHV DDMKMSQFGI FGSNDCNSNA LAKDWYGYVG DNGSYCHGME  240
TINMASTSAL VGEGFPTPAA DCHLADDNWV NDGFVDGIWS MGELWELRNA LH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28311355108B-MYB
1h8a_C5e-283013524128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves and flowers. {ECO:0000269|PubMed:19529828}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ2013040.0HQ201304.1 Gossypium hirsutum MYB146 (MYB146) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012440295.10.0PREDICTED: transcription factor MYB108-like
SwissprotQ9C9G71e-76MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A0D2RPA10.0A0A0D2RPA1_GOSRA; Uncharacterized protein
STRINGGorai.008G287100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2429834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.11e-78myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]