PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G178000.1
Common NameB456_008G178000, LOC105764478
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 494aa    MW: 54141.4 Da    PI: 9.8186
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G178000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0015102121221
                         EETTTTEEESSHHHHHHHHH CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                         +C+ Cgk F++   L  H++
  Gorai.008G178000.1 102 VCKECGKGFRSLKALCGHMS 121
                         8*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.019101123IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.18101128IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.1E-4102129IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280103123IPR007087Zinc finger, C2H2
PfamPF139121.6E-6103125IPR007087Zinc finger, C2H2
SuperFamilySSF576672.15E-6344366No hitNo description
SMARTSM003550.18344366IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.097344371IPR007087Zinc finger, C2H2
PfamPF139124.7E-6344367IPR007087Zinc finger, C2H2
PROSITE patternPS000280346366IPR007087Zinc finger, C2H2
SuperFamilySSF576672.15E-6422449No hitNo description
SMARTSM003550.19427449IPR015880Zinc finger, C2H2-like
PfamPF139122.2E-8427449IPR007087Zinc finger, C2H2
PROSITE profilePS501578.871427449IPR007087Zinc finger, C2H2
PROSITE patternPS000280429449IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MKNAVFSKVL SLFASFATKG SHVGSRHIRT HMKHDSFAET EEESADMPIN RLISTANPRN  60
IKRFVVSDAG GQSAAYGLRE NPKKTKRFSD SGNGSSLKEM LVCKECGKGF RSLKALCGHM  120
SCHSDNGEKQ KVIMDSQSDT ETSAPSKRRS RRGTPKTIGV YRNNNSENLG NGSSSVSEIV  180
QEQEEVAMCL MMLSRDSGCR KRMNSAADSS DNNSVVLEDK SSSIDVTITI KNDMNRGGLL  240
KMTKQRDNKL KKSPESDPSS ENSDSGYFRN GPKKVESDDS VDGFLKNNEF KKPNIESGSG  300
FRDRDATYSK CLSKFKSVKT GSPKYDLRKN GKNDYYSPQK GSKYECLTCN KTFDSHRALG  360
GHRASHTKVN GYNESIQESY EANDSFTAPM TDTKVTKASS NGKRLGVPRG SSYNAEKRLG  420
SKKNKGHECP FCFRVFKSGQ ALGGHKRSHF VGGSDDRTLV IKQDSSDMPA LIDLNLPAPV  480
EEDAFGNAAG FMP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012438522.10.0PREDICTED: zinc finger protein 37-like isoform X1
TrEMBLA0A0D2T2C30.0A0A0D2T2C3_GOSRA; Uncharacterized protein
STRINGGorai.008G178000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.15e-70C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]