PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G107300.1
Common NameB456_007G107300, LOC105802788
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 333aa    MW: 37259.6 Da    PI: 5.4174
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G107300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.82.1e-28109170159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         +dDg++WrKYGqK + gs+fpr+YYrCt++   gC + k+v++s++dp+++e++Y+g+H+++
  Gorai.007G107300.1 109 VDDGFCWRKYGQKAILGSNFPRGYYRCTHRhsqGCLAIKQVQKSNDDPTIFEVKYKGRHTCN 170
                         59***************************98999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.1E-27100171IPR003657WRKY domain
PROSITE profilePS5081122.309104172IPR003657WRKY domain
SuperFamilySSF1182909.42E-25107171IPR003657WRKY domain
SMARTSM007741.7E-38109171IPR003657WRKY domain
PfamPF031069.4E-25110169IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0048527Biological Processlateral root development
GO:0005730Cellular Componentnucleolus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEQGALLNEL KEGREVTNLL MKHLHLPSSY QTRLVLIEKI LGSYENALSI LNCNGLVVET  60
RPSLSTMESL PSIDHSSPDK RDVFKKRKTS SGWTEQLRVC SGTSLDNPVD DGFCWRKYGQ  120
KAILGSNFPR GYYRCTHRHS QGCLAIKQVQ KSNDDPTIFE VKYKGRHTCN QTSHFAATYV  180
SVSTESENEG NYSPKRQHQL EVKQKQAQQA FSSFGSGIKV KTEDLDNRED IFPSFPFPVE  240
SEQVKNGSFV EALMENEIMG NLSPAFISPA TSESNYFSMS PCHMGSFESD LTDIISAPTS  300
VTNSPIGDLD ISSLDKLEFD PSFPFDNPEF FY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-18109169868OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00112ampDAPTransfer from AT2G46400Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4384730.0KM438473.1 Gossypium aridum WRKY90 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012490093.10.0PREDICTED: probable WRKY transcription factor 46
TrEMBLA0A0D2TD130.0A0A0D2TD13_GOSRA; Uncharacterized protein
STRINGGorai.007G107300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48882352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.12e-59WRKY DNA-binding protein 46
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]