PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.006G205300.1 | ||||||||
Common Name | B456_006G205300, LOC105800192 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 407aa MW: 46322.6 Da PI: 6.2378 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.3 | 9.1e-51 | 16 | 146 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 +ppGfrFhPt+eel+++yL kkv+++k++l +vi+evd++k+ePwd+++ + ++ ++ wyfFs++dkky+tg+r+nrat+sg+Wkat Gorai.006G205300.1 16 VPPGFRFHPTEEELLHYYLGKKVASQKIDL-DVIPEVDLNKLEPWDIQEkckvgSSSSPQNGWYFFSHKDKKYPTGTRTNRATASGFWKAT 105 69****************************.9***************95354432233556****************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g+dk +++ + + +gl+ktLvfykgrap+g+k+dW+mheyrl Gorai.006G205300.1 106 GRDKIIYC-GFRRIGLRKTLVFYKGRAPHGKKSDWIMHEYRL 146 ********.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-57 | 11 | 175 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.714 | 16 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-26 | 17 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MQSADMNLSI NGQSQVPPGF RFHPTEEELL HYYLGKKVAS QKIDLDVIPE VDLNKLEPWD 60 IQEKCKVGSS SSPQNGWYFF SHKDKKYPTG TRTNRATASG FWKATGRDKI IYCGFRRIGL 120 RKTLVFYKGR APHGKKSDWI MHEYRLDNDS NVQSFKTIGD SMAEDGWVVC RVFRKKNYQK 180 TLEDPKSSSS YTSPDPEAPM VFSGNEEVLD QVLQCMGKTC KMENDLFTST NNPRSFEENK 240 HEMFMHMPRL ESPTLPPLPI HSPLLDQETS FKPCYQSIDD TLITVTQPSS INQGDSGAYD 300 HHQTDSVIDD NNGSKNIWVN DWVTLDRFVA SQLNGQVETS KQQSYLSDPS VAFSLCHHDD 360 IQLSNIRLQR SNQNSQVYGD EIDLWSLTKS SSPSSSSDPF YQCRYN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-50 | 12 | 177 | 11 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in various aboveground tissues undergoing thickening of the lignified secondary wall such as anthers, filaments of stamens, the base of carpels, styles, the boundaries between siliques and pedicels, the midrib of leaf veins, and inflorescence stems, specifically in interfascicular fibers (sclerenchyma), cells differentiating into vascular vessels, and xylary fibers (secondary xylem). {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX614892 | 1e-98 | JX614892.1 Gossypium hirsutum clone NBRI_GE58598 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012486624.1 | 0.0 | PREDICTED: NAC domain-containing protein 43-like | ||||
Swissprot | Q84WP6 | 1e-111 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | A0A0D2S6X0 | 0.0 | A0A0D2S6X0_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.006G205300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM778 | 28 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46770.1 | 1e-113 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.006G205300.1 |
Entrez Gene | 105800192 |