PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G149100.1

Common Name

B456_006G149100, LOC105799615

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TALE

Protein Properties

Length: 645aa MW: 70119.4 Da PI: 7.588

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G149100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.4	1.4e-09	362	399	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Gorai.006G149100.1 362 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 399 554459******************************88 PP
2	BELL	120.6	6.7e-39	226	297	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakL+s+l+eVd+rY+qy++q+q+vis Fe+ ag+gsak Yt+lAlk+iS++FrcLkdai++qi Gorai.006G149100.1 226 ERQEIQMKKAKLISMLDEVDQRYRQYHHQIQIVISTFEQTAGIGSAKTYTALALKTISKQFRCLKDAIIGQI 297 79*********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.7E-62	148	295	IPR006563	POX domain
Pfam	PF07526	3.1E-50	153	293	IPR006563	POX domain
PROSITE profile	PS50071	12.195	340	403	IPR001356	Homeobox domain
CDD	cd00086	3.33E-12	343	404	No hit	No description
SMART	SM00389	5.3E-9	343	407	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.13E-17	344	409	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.1E-29	346	409	IPR009057	Homeodomain-like
Pfam	PF05920	2.6E-18	360	399	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 645 aa Download sequence Send to blast
MATYFHGNPE IQAADDLQTL VLMNPAYVHY SNTPPPPPPS NNLVFVNSLS PNAPSSHSQQ 60 LVGIPLPAVT SGSNQDAISS LHGLVQRLHY NSYNPIDPSG EPRDTPRAQQ GLSLTLSSQH 120 QPGNYGSQPQ AVSGGSASSG SAVTNGVSGI QSVLLSSKYL KAAQELLDEV VNVDNTGFTK 180 TEMAKKGSGN DSNSSKATGE LSAAAGDGSG GENAVGKRRT ELSTAERQEI QMKKAKLISM 240 LDEVDQRYRQ YHHQIQIVIS TFEQTAGIGS AKTYTALALK TISKQFRCLK DAIIGQIRAV 300 NKSLGEEDRL GGKTEGSRLK FVDHQLRQQR ALQQLGMIQH NAWRPQRGLP ERSVSVLRAW 360 LFEHFLHPYP KDSDKHMLAK QTGLTRSQVS NWFINARVRL WKPMVEEMYL EEIKEQEQNH 420 EGSASKSTGP TPAKNQAKSL SSSKQDNSAN QNASSMSISM ASTSPLAGNG QNQSGFSFIG 480 SSELEGITQG SPKKPRSTEV LLQSPIDMDI KQREAADDVS IKFGKEGYSF MGTDTNFMGG 540 FGQYPIAEMA RFDAEHFAPR FPGNGVSLTL GLPHCENLSL PATHQTFLPN QTLQMGRRLD 600 IGEPNEYGAI NPSTPHSSVA YEIENIDVQN RKRFAAQLLP DFVA*

Sequence ? help Back to Top

Protein Sequence Length: 645 aa Download sequence Send to blast

MATYFHGNPE IQAADDLQTL VLMNPAYVHY SNTPPPPPPS NNLVFVNSLS PNAPSSHSQQ  60
LVGIPLPAVT SGSNQDAISS LHGLVQRLHY NSYNPIDPSG EPRDTPRAQQ GLSLTLSSQH  120
QPGNYGSQPQ AVSGGSASSG SAVTNGVSGI QSVLLSSKYL KAAQELLDEV VNVDNTGFTK  180
TEMAKKGSGN DSNSSKATGE LSAAAGDGSG GENAVGKRRT ELSTAERQEI QMKKAKLISM  240
LDEVDQRYRQ YHHQIQIVIS TFEQTAGIGS AKTYTALALK TISKQFRCLK DAIIGQIRAV  300
NKSLGEEDRL GGKTEGSRLK FVDHQLRQQR ALQQLGMIQH NAWRPQRGLP ERSVSVLRAW  360
LFEHFLHPYP KDSDKHMLAK QTGLTRSQVS NWFINARVRL WKPMVEEMYL EEIKEQEQNH  420
EGSASKSTGP TPAKNQAKSL SSSKQDNSAN QNASSMSISM ASTSPLAGNG QNQSGFSFIG  480
SSELEGITQG SPKKPRSTEV LLQSPIDMDI KQREAADDVS IKFGKEGYSF MGTDTNFMGG  540
FGQYPIAEMA RFDAEHFAPR FPGNGVSLTL GLPHCENLSL PATHQTFLPN QTLQMGRRLD  600
IGEPNEYGAI NPSTPHSSVA YEIENIDVQN RKRFAAQLLP DFVA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	4e-16	349	407	5	63	Homeobox protein Meis2
3k2a_B	4e-16	349	407	5	63	Homeobox protein Meis2
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.65	0.0	flower\|seedling\| flowering

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012485724.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_012485725.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_012485726.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_012485727.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	0.0	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	A0A0D2SY52	0.0	A0A0D2SY52_GOSRA; Uncharacterized protein
STRING	Gorai.006G149100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5008	26	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-161	BEL1-like homeodomain 1

Link Out ? help Back to Top
Phytozome	Gorai.006G149100.1
Entrez Gene	105799615

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]