PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G198500.1 | ||||||||
Common Name | B456_005G198500, LOC105794834 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | VOZ | ||||||||
Protein Properties | Length: 452aa MW: 50381.4 Da PI: 5.0553 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 440.1 | 2.9e-135 | 200 | 416 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwn 91 pppsaf+gpkcalwdctrpaqgs+w+qdycssfhatlalne++pgttp+lrp+gi+lkd+ll++a++ak+qgk+vgip+cegaat+kspwn Gorai.005G198500.1 200 PPPSAFMGPKCALWDCTRPAQGSDWFQDYCSSFHATLALNEDPPGTTPILRPGGISLKDNLLLDAVRAKAQGKNVGIPQCEGAATMKSPWN 290 89***************************************************************************************** PP VOZ 92 aaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalal 182 a+elfdlsllege irewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkef+g+krsyymdpqps+++ewhl+eyei+ +da+al Gorai.005G198500.1 291 ATELFDLSLLEGEIIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMKEFAGQKRSYYMDPQPSGKYEWHLFEYEIYGCDAFAL 381 ******************************************************************************************* PP VOZ 183 yrlelklvdekksakgkvskdsladlqkklgrlta 217 yrlelkl+++kks+k+kv kdsladlqkk+grlta Gorai.005G198500.1 382 YRLELKLANQKKSPKAKVPKDSLADLQKKMGRLTA 416 *********************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 452 aa Download sequence Send to blast |
MQNNSSKNKC SSASHQQMVD NAKNRLNFLQ DQFTDLQAAR KEGRAGDVAV LEEQVYQNLR 60 EWKAELCTPS PASSLLGSLG SFSDDINRLL QLYEEEDDAT SPLKEPAVLK PEIDDQSLNP 120 STLPVIPEDY FVTHEPQEQS FQGFDLCKVS TSANADINYQ LDYHPFDLQQ DFDHEHLLDA 180 NGTEDYVKDA NSNMLPNISP PPSAFMGPKC ALWDCTRPAQ GSDWFQDYCS SFHATLALNE 240 DPPGTTPILR PGGISLKDNL LLDAVRAKAQ GKNVGIPQCE GAATMKSPWN ATELFDLSLL 300 EGEIIREWLF FDKPRRAFES GNRKQRSLPD YSGRGWHESR KQVMKEFAGQ KRSYYMDPQP 360 SGKYEWHLFE YEIYGCDAFA LYRLELKLAN QKKSPKAKVP KDSLADLQKK MGRLTAEVPG 420 DDKPPGKGKT KANKKAAMAA AAAANVNSAQ D* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC166092 | 9e-35 | AC166092.4 Glycine max cultivar Williams 82 clone gmw1-93l19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012479644.1 | 0.0 | PREDICTED: transcription factor VOZ1-like isoform X2 | ||||
Refseq | XP_012479645.1 | 0.0 | PREDICTED: transcription factor VOZ1-like isoform X2 | ||||
Swissprot | Q9SGQ0 | 1e-177 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A0D2SKF6 | 0.0 | A0A0D2SKF6_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G198500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11060 | 25 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 1e-165 | vascular plant one zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G198500.1 |
Entrez Gene | 105794834 |
Publications ? help Back to Top | |||
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