PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.002G180300.1 | ||||||||
Common Name | B456_002G180300, LOC105785724 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 254aa MW: 28759.4 Da PI: 8.6532 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.6 | 1.4e-13 | 13 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ +Ede+l++++++ G +W+t ++ g+ R++k+c++rw +yl Gorai.002G180300.1 13 KGAWSMQEDEKLLNYIRKNGEAgCWRTLPQAAGLLRCGKSCRLRWINYL 61 79******************989**********99************97 PP | |||||||
2 | Myb_DNA-binding | 53.8 | 4.5e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ ++Ed+l+++++++lG++ W++Ia +++ gRt++++k++w+++l Gorai.002G180300.1 67 RGNFGEDEDDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSHL 112 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-19 | 4 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.87 | 8 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.41E-25 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.2E-9 | 12 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.6E-12 | 13 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.11E-6 | 15 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.592 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-26 | 64 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.67E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MRKPCCDKRD TNKGAWSMQE DEKLLNYIRK NGEAGCWRTL PQAAGLLRCG KSCRLRWINY 60 LRPDVKRGNF GEDEDDLIIK LHALLGNRWS LIAGRLPGRT DNEVKNYWNS HLRRKLINMG 120 IDPNKHSLTR HNRPHHNSNT NTSASATLIS SASKLPKSHK CIAPPNNKPW RDNDQASDAA 180 SCLLEDEDDD NLPCSTTQYQ LPDLNLELTI SVSAPTAKLE QHIHQIQEPN HKQCSNISSD 240 LRFSPTPTLL LFH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-26 | 10 | 116 | 4 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed at low level. Highly expressed in siliques. Weakly expressed in seedlings, young and mature leaves, cauline leaves, stems, flower buds and roots. {ECO:0000269|PubMed:9839469}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012467309.1 | 0.0 | PREDICTED: myb-related protein 308-like | ||||
Swissprot | Q9SZP1 | 1e-78 | MYB4_ARATH; Transcription repressor MYB4 | ||||
TrEMBL | A0A0D2NPJ8 | 0.0 | A0A0D2NPJ8_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.002G180300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM25062 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 2e-78 | myb domain protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.002G180300.1 |
Entrez Gene | 105785724 |