PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G139000.1
Common NameB456_002G139000, LOC105785256
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 671aa    MW: 70551.2 Da    PI: 6.7083
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G139000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.61.4e-08204249145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwq 45 
                         r++W++ Ed+ l+ av++ G g+W+ I r      Rt+ q+  rw 
  Gorai.002G139000.1 204 RKPWSEAEDLELIAAVQKCGVGNWANILRGDFkGDRTASQLAQRWT 249
                         789************************98422359*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.342199256IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-12200252IPR009057Homeodomain-like
SuperFamilySSF466892.58E-12201257IPR009057Homeodomain-like
SMARTSM007175.4E-11203254IPR001005SANT/Myb domain
PfamPF002493.9E-7204249IPR001005SANT/Myb domain
CDDcd116608.83E-14205253No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MIQNTKKQKK GSISEEDIST LLQRYTATTV LALLQEVAQF PGVKLDWNAL VKKTSTGISN  60
AREYQMLWRH LAYRDVLLEK LEDGADPLDD DSDLEYELEP CPSVSSETSA EAAACVKVLI  120
ASGLPNDSSL ANSSMVDAPL TINIPNARSF RVSSENLQPS CSMPGTNITV PVSVQKKILP  180
SVTSAETMEG NGPAGANLPA RRKRKPWSEA EDLELIAAVQ KCGVGNWANI LRGDFKGDRT  240
ASQLAQRWTV IKKRCGNLNV EGNSAIPQLS EAQLATRSAL SLALDMPDKN LTAACTNNPG  300
LKIMSSSAPP TAGGEASARA QSQVQQGPLA SVEAQIQSQQ GPIASVSSRN RSQEGPITSA  360
SPQNPSQQGP VASVQVPNQS QQGSMPTKTS PRGSSGSTLK SRVTLKKAPA KPFSTTGSIL  420
DATAVAAGAR IGSPEAAASL LKAAQSKNAI HIMTTAGSSV KPVIPSGTSS QYVCTGLTAE  480
AHSSPVTSST LHPGSVKPAT QRVEHTSSVS LSINAPMQQC NAVTSGTAVE VSPKEDLEIK  540
GSVSDSLPKE QVRENRAYVS KNERGEEVKE HKEALTNPGS ELKNIEAVAE HPNEKLMVDG  600
DQVGVKANLV EESVNASDNK DCLLVKKSTT QPTAEESCRN HSMTEMTAKA GCLSDGCAKN  660
LEVLSTAETG *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012466697.10.0PREDICTED: uncharacterized protein LOC105785256
TrEMBLA0A0D2Q6230.0A0A0D2Q623_GOSRA; Uncharacterized protein
STRINGGorai.002G139000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48232751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.13e-68MYB_related family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]