PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.20G172100.1.p | ||||||||
Common Name | GLYMA_20G172100, LOC100787232 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 550aa MW: 61694.6 Da PI: 4.5048 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.9 | 9.7e-54 | 20 | 146 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 +pGfrFhPtdeelv++yLk+k+ gk+l+l +vi+e+d+yk++P+dLp + +k+++++w+fF++rd+ky++g r+nrat++gyWkatgkd Glyma.20G172100.1.p 20 MPGFRFHPTDEELVMYYLKRKICGKRLKL-DVIHETDVYKWDPEDLPgQsILKTGDRQWFFFCHRDRKYPNGGRSNRATRRGYWKATGKD 108 69***************************.9***************96446788999********************************* PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++v++ +++ vg+kktLvfy grap+ge+tdWvmhey+l Glyma.20G172100.1.p 109 RNVIC-NSRSVGVKKTLVFYAGRAPSGERTDWVMHEYTL 146 *****.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-60 | 15 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.579 | 19 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.6E-28 | 21 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070301 | Biological Process | cellular response to hydrogen peroxide | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 550 aa Download sequence Send to blast |
MGEASGAGSA DCFSQMMSSM PGFRFHPTDE ELVMYYLKRK ICGKRLKLDV IHETDVYKWD 60 PEDLPGQSIL KTGDRQWFFF CHRDRKYPNG GRSNRATRRG YWKATGKDRN VICNSRSVGV 120 KKTLVFYAGR APSGERTDWV MHEYTLDEEE LKRCQGVKDY YALYKVYKKS GPGPKNGEQY 180 GAPFNEEEWA DDDIVDFNIN SADQEAPNDV ADNVNVPLPF LDDEINNIIR EILDDELVLD 240 QQHVNGYPDF PQVVSEETQS TVVDQFSEDV MLPEPVRISH PSCQFFDAQP SFDFNRPVTS 300 HLHVSETSEV TSASNIKTKE LDFNEDGFLE INDLIDTEPT LSNVENSVEY QHFEDGLSEL 360 DLFQDAQMFL RDLGPIIHET DSHAYTNALV SSNIECQSYQ LLPNPEDANQ TVGEFWMHGE 420 SNQLSSPGVV YESVGFPTEG NNNQSSTVED VATSSLSSAL WAFVESIPTT PASAAESALV 480 NRALNRMSSF SRLKIKHTNI AASGKDTGTM KRAGRKGLPF LFFSILIALC AFCWVFVGNL 540 RLVGRSISP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-50 | 21 | 146 | 17 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 37 | 46 | KRKICGKRLK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.28750 | 0.0 | cotyledon| hypocotyl| leaf| root| seed coat| somatic embryo| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:17158162}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Transcriptional activator that acts as positive regulator of AOX1A during mitochondrial dysfunction. Binds directly to AOX1A promoter. Mediates mitochondrial retrograde signaling. {ECO:0000269|PubMed:24045017}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00179 | DAP | Transfer from AT1G34190 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.20G172100.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold and drought stresses. {ECO:0000269|PubMed:17158162}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF657305 | 0.0 | KF657305.1 Glycine max NAC transcription factor (SNAC38) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003556180.1 | 0.0 | NAC domain-containing protein 17 | ||||
Refseq | XP_006606193.1 | 0.0 | NAC domain-containing protein 17 | ||||
Swissprot | Q9XIC5 | 1e-134 | NAC17_ARATH; NAC domain-containing protein 17 | ||||
TrEMBL | I1NH70 | 0.0 | I1NH70_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA20G31210.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6131 | 34 | 51 | Representative plant | OGRP9932 | 7 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34190.1 | 1e-136 | NAC domain containing protein 17 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.20G172100.1.p |
Entrez Gene | 100787232 |