PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G161000.1.p
Common NameGLYMA_20G161000, LOC100789003
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 664aa    MW: 73759.5 Da    PI: 8.8414
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G161000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.1e-057496223
                         EETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                         kC++C++ F ++ n++rHir  H
  Glyma.20G161000.1.p 74 KCNKCSREFCSPINYRRHIRIqH 96
                         7*******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.32873101IPR007087Zinc finger, C2H2
PROSITE patternPS0002807596IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MPVAKLPASG TTDFRKTDDG NDSLDTIIRQ AIGKEPLLSF PRAGVSPVQW IQLLNALDQQ  60
GLPLLSPVKV HLQKCNKCSR EFCSPINYRR HIRIQHRLKK LDKDSDKNRD LLGAYWDKLS  120
VEEAKEVVSF KNVMLEEVPG SSILEALTTL RKQGFSSLPQ YYLRAGSALL NIVQSRPSSF  180
PKSSQELFSI LDDSSEKTFL VGSAVSMQRY VFDGEAGKIG LEPKNLVACT SFLLEQNLVK  240
AWLADKDAEA LRCQKLLVEE EEAAQKRKYE ILERKHQKKL RQKEHKARER LEDDTEIKEN  300
IRSTGEDVSP TEASSGTCDF EAHNPDIFAD HSTPPHVTSR CLDNDEVIEG VTLSGYDFDT  360
DQYIERQTSR GHNHRRIMAT RWQGLPKSQW AIANGSHPGH NSQMSKLGVI QKHGTNCDQR  420
VAPIVNGSKF WSRKPKPETN GVVLKARLQK EPDKCKNHEV LIGSVSVCLG NCSHSEGNLV  480
APQRDSLVDN LAKQNTAQEK PVKHDSSQGS NGRLTVKLWR PVSQHGTKDL LPLQNGGTEA  540
DVINGKYDLN LSGQCSLRLC SIDGSDIGFG DNFSHTGDSE SLRLSSHAAK AFLVQRWKEA  600
ISSNHVKLFV TPDCQSSNAD RCSIIANSEN RLPATSGVAK SKPKTKLEKG MKIKYIPKQK  660
ATT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.161170.0cotyledon| flower| hypocotyl| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G161000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-127AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003555389.10.0uncharacterized protein LOC100789003
TrEMBLK7N3T00.0K7N3T0_SOYBN; Uncharacterized protein
STRINGGLYMA20G30061.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45172739
Representative plantOGRP36431115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.11e-148C2H2-like zinc finger protein