PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G121800.1.p
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 365aa    MW: 40117.6 Da    PI: 7.7922
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G121800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.53e-15280305126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          +ktelC+ +++tGtC+yGd C+FaHg
  Glyma.20G121800.1.p 280 FKTELCNKWQETGTCPYGDHCQFAHG 305
                          79***********************8 PP
2zf-CCCH18.34.2e-06318342125
                          --S---SGGGGTS.--TTTTT-SS-S CS
              zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaH 25 
                          ykte Cr  ++ G  C+yG rC+F H
  Glyma.20G121800.1.p 318 YKTEVCRMVLA-GvVCPYGHRCHFRH 342
                          9**********.66**********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.106.8E-19275312IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-11276311IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-9279306IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.004279307IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-12280305IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-11313346IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-8313347IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-4317344IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.803317345IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MHNKDTCSPS SNGGFGGGAS AGQMPSTGGL YSSLYSALSS ENLPSLSASC SNSSGGGGSL  60
YPYSESIQKH QDMVNRQSMC LNRLVETSKE VEALREENGL LRAANKELQK QLHLVIQASL  120
ENHYGGGGSS GQMQPTLFDV LHGFRGLHIG EGNKENYADW NNNNHNNQNH NNIMNNNNNN  180
NKELQEVSDE SPTSVIENNN VVEVERFSLP KSISVRSNGY LKMSQSAALA PNNNNATRNK  240
GATRPRASAT PPEPVQKVYV RGGEKEEEPL EMIVYNQGMF KTELCNKWQE TGTCPYGDHC  300
QFAHGIGELR PVIRHPRYKT EVCRMVLAGV VCPYGHRCHF RHALTEQEKA VVSQPKPRSM  360
KLER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A3e-22280346470Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G121800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-149AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006605943.10.0zinc finger CCCH domain-containing protein 15
SwissprotQ9C9F56e-82C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A0R0EAY80.0A0A0R0EAY8_SOYBN; Uncharacterized protein
STRINGGLYMA20G25712.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Representative plantOGRP20581636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.12e-79C3H family protein