PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.18G261300.1.p

Common Name

GLYMA_18G261300

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NAC

Protein Properties

Length: 389aa MW: 43930.5 Da PI: 6.0673

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.18G261300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172	1.8e-53	43	169	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lp+GfrFhPtdeel+++yL+kkv ++ + + +i evd++k+ePwdLp +k +e+ewyfF+ rd+k +tg r+nrat+ gyWkatgkdk Glyma.18G261300.1.p 43 LPAGFRFHPTDEELINQYLTKKVVDNCFCA-IAIGEVDLNKCEPWDLPGLAKMGETEWYFFCVRDRKFPTGIRTNRATDIGYWKATGKDK 131 799*********************9888.78***********8888899******************************* PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 e++ +++l+g+kktLvfykgrapkgekt+Wvmheyrle Glyma.18G261300.1.p 132 EIIM-ENALIGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 169 .999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.49E-61	40	190	IPR003441	NAC domain
PROSITE profile	PS51005	57.55	43	190	IPR003441	NAC domain
Pfam	PF02365	2.8E-28	44	168	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MSLFVFPRGK HISASFFNGG FWCRMGSIEN ASKPRKENPK FELPAGFRFH PTDEELINQY 60 LTKKVVDNCF CAIAIGEVDL NKCEPWDLPG LAKMGETEWY FFCVRDRKFP TGIRTNRATD 120 IGYWKATGKD KEIIMENALI GMKKTLVFYK GRAPKGEKTN WVMHEYRLEG KHNQPKPGKS 180 EWVICRVFEK SRCGKKMHVP KCGRFNNPFG EEPSSGASLL PPLMDSSPYN SETRTTTAGE 240 LSQVTCFSDP NQTEDQNNTH DDIVDSMETP ILNFSPFSRP DDASTLAKAT LSSASNQSAQ 300 IAHQIGESQF PDYCYAPQEP SMLRMLMENH EPCAKQTQKE EFPEGRDFDG DISSMIYSSD 360 MINRMFGNQE HSSSASAGPV DTDFLWNY*

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MSLFVFPRGK HISASFFNGG FWCRMGSIEN ASKPRKENPK FELPAGFRFH PTDEELINQY  60
LTKKVVDNCF CAIAIGEVDL NKCEPWDLPG LAKMGETEWY FFCVRDRKFP TGIRTNRATD  120
IGYWKATGKD KEIIMENALI GMKKTLVFYK GRAPKGEKTN WVMHEYRLEG KHNQPKPGKS  180
EWVICRVFEK SRCGKKMHVP KCGRFNNPFG EEPSSGASLL PPLMDSSPYN SETRTTTAGE  240
LSQVTCFSDP NQTEDQNNTH DDIVDSMETP ILNFSPFSRP DDASTLAKAT LSSASNQSAQ  300
IAHQIGESQF PDYCYAPQEP SMLRMLMENH EPCAKQTQKE EFPEGRDFDG DISSMIYSSD  360
MINRMFGNQE HSSSASAGPV DTDFLWNY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-51	40	196	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-51	40	196	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-51	40	196	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-51	40	196	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-51	40	196	17	174	NAC domain-containing protein 19
3swm_B	2e-51	40	196	17	174	NAC domain-containing protein 19
3swm_C	2e-51	40	196	17	174	NAC domain-containing protein 19
3swm_D	2e-51	40	196	17	174	NAC domain-containing protein 19
3swp_A	2e-51	40	196	17	174	NAC domain-containing protein 19
3swp_B	2e-51	40	196	17	174	NAC domain-containing protein 19
3swp_C	2e-51	40	196	17	174	NAC domain-containing protein 19
3swp_D	2e-51	40	196	17	174	NAC domain-containing protein 19
4dul_A	2e-51	40	196	14	171	NAC domain-containing protein 19
4dul_B	2e-51	40	196	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.18G261300.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX392398	0.0	JX392398.1 Glycine max NAC domain protein (NLP1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003551739.1	0.0	NAC domain-containing protein 100-like isoform X1
Refseq	XP_006602918.1	0.0	NAC domain-containing protein 100-like isoform X1
Refseq	XP_006602923.1	0.0	NAC domain-containing protein 100-like isoform X1
Refseq	XP_025982386.1	0.0	NAC domain-containing protein 100-like isoform X1
Refseq	XP_025982387.1	0.0	NAC domain-containing protein 100-like isoform X1
Swissprot	Q9FLJ2	1e-103	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	K7MUT8	0.0	K7MUT8_SOYBN; Uncharacterized protein
STRING	GLYMA18G49620.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-102	NAC domain containing protein 100

Link Out ? help Back to Top
Phytozome	Glyma.18G261300.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]