PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.18G241300.1.p | ||||||||
Common Name | GLYMA_18G241300, LOC100785411 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C3H | ||||||||
Protein Properties | Length: 427aa MW: 46913.7 Da PI: 7.8979 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.6 | 1.5e-11 | 39 | 65 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p Glyma.18G241300.1.p 39 PGEPDCSYYIRTGLCRFGATCRFNHPP 65 5789*********************97 PP | |||||||
2 | zf-CCCH | 38 | 2.7e-12 | 86 | 110 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++C+F+H++ Glyma.18G241300.1.p 86 QPECQYYLKTGTCKFGATCRFHHPR 110 799********************96 PP | |||||||
3 | zf-CCCH | 38.1 | 2.5e-12 | 132 | 156 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ Glyma.18G241300.1.p 132 EPECGYYLRTGQCKFGNTCKFHHPQ 156 799********************97 PP | |||||||
4 | zf-CCCH | 37.1 | 5.3e-12 | 288 | 312 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+f+++tG Ck+G+ C+F+H+ Glyma.18G241300.1.p 288 DQPECQFYMKTGDCKFGAVCRFHHP 312 689*********************8 PP | |||||||
5 | zf-CCCH | 38.1 | 2.5e-12 | 333 | 359 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ Glyma.18G241300.1.p 333 PGEPLCVFYSRYGICKFGPSCKFDHPM 359 589**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.2E-4 | 38 | 65 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.976 | 39 | 66 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.3E-8 | 40 | 65 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-5 | 43 | 66 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.0E-4 | 44 | 64 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.253 | 83 | 111 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.1E-6 | 83 | 110 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-9 | 86 | 110 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-6 | 87 | 112 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.7E-5 | 89 | 110 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.253 | 129 | 157 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-5 | 129 | 156 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.0E-10 | 132 | 156 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.45E-6 | 132 | 157 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.3E-4 | 135 | 155 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.38 | 286 | 314 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.1E-5 | 286 | 313 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-8 | 288 | 312 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-5 | 289 | 315 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-4 | 292 | 314 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-7 | 332 | 359 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.821 | 332 | 360 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.6E-9 | 334 | 359 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-5 | 335 | 359 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.7E-4 | 337 | 357 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 427 aa Download sequence Send to blast |
MEFDAAIPVS REHLPQDAMW QINLRSSETM ESEPYPEHPG EPDCSYYIRT GLCRFGATCR 60 FNHPPNRKLA IAAARMKGEF PERIGQPECQ YYLKTGTCKF GATCRFHHPR DKAGIAGRVA 120 LNILGYPLRP NEPECGYYLR TGQCKFGNTC KFHHPQPNNM VLSMRSSPVY PTVHSPTTPG 180 HQSYATGITN WSSSSYIPSP RWQGPSSYAP LILPQGMVSV SGWSAYSGQM GSDSPQQTMA 240 NGQSYGTSRQ SEPANSGSQG AYSQFRSGSV PVGFYALQRE NIFPERPDQP ECQFYMKTGD 300 CKFGAVCRFH HPHERMIPAP DCVLSPIGLP LRPGEPLCVF YSRYGICKFG PSCKFDHPMG 360 VFTYNMSASP LADAPGRRML GSSSGTSALN LSSEGLVESG SANPRRLSLS ETRQIPSGDD 420 NIDEEG* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.6514 | 0.0 | cotyledon| leaf| root| seed coat |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.18G241300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU624138 | 0.0 | EU624138.1 Medicago sativa zinc finger protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014626504.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like isoform X2 | ||||
Refseq | XP_028213695.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like | ||||
Swissprot | Q9SWF9 | 0.0 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A445FWS9 | 0.0 | A0A445FWS9_GLYSO; Zinc finger CCCH domain-containing protein ZFN-like isoform B | ||||
TrEMBL | I1N3Y4 | 0.0 | I1N3Y4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA18G47660.3 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5321 | 33 | 55 | Representative plant | OGRP1247 | 17 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-180 | zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.18G241300.1.p |
Entrez Gene | 100785411 |