PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G208800.1.p
Common NameGLYMA_18G208800, LOC100792833
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 542aa    MW: 60513.1 Da    PI: 8.075
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G208800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.62.2e-32202259260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          +Dg+nWrKYGqK+vkgse+prsYY+Ct+++C+vkkkve++  +++++ei+Y+g+Hnh+k
  Glyma.18G208800.1.p 202 EDGFNWRKYGQKQVKGSENPRSYYKCTHPNCSVKKKVEKTL-EGQITEIVYKGQHNHPK 259
                          8****************************************.***************85 PP
2WRKY101.74.4e-32370428159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDg++WrKYGqK+vkg++++rsYY+Ct +gC+v+k+ver+a+d k+v++tYeg+Hnh+
  Glyma.18G208800.1.p 370 LDDGFRWRKYGQKVVKGNPNARSYYKCTAPGCSVRKHVERAAHDIKAVITTYEGKHNHD 428
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.8E-28194259IPR003657WRKY domain
PROSITE profilePS5081121.172196260IPR003657WRKY domain
SuperFamilySSF1182901.83E-24197259IPR003657WRKY domain
SMARTSM007742.6E-35201259IPR003657WRKY domain
PfamPF031068.6E-25202258IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.8E-36355430IPR003657WRKY domain
SuperFamilySSF1182901.2E-27362430IPR003657WRKY domain
PROSITE profilePS5081136.483365430IPR003657WRKY domain
SMARTSM007741.7E-36370429IPR003657WRKY domain
PfamPF031063.3E-24371428IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MGDHSNWETS ELSHNNHHQN HQVGLDVLKF KSVQPPSLPL SPSPVSPSSY LNFSSAFSPS  60
ELLNSPLFFP SPNIFASPTT EALVGQSFNW RNGSGEEQQR GKEDEKNYSD FSFQTQIQSS  120
LNMFQVQEPL KKQDMWKFNE PTKQSDFSSE RTATKSEYPS IQKFSSEMAA GKPEIQSNSV  180
PGSGYFDYTS ASLSVREQKR AEDGFNWRKY GQKQVKGSEN PRSYYKCTHP NCSVKKKVEK  240
TLEGQITEIV YKGQHNHPKL QSTRRTNSQS INQPSSSCTN SGISDQSVVT LGNPQMDHFS  300
IQEDSSASVG EENFEQTSQT SYSGGDEDNL GPDAKRWKED NKNDGYSVSG SRTVREPRVV  360
VQTTSEIDIL DDGFRWRKYG QKVVKGNPNA RSYYKCTAPG CSVRKHVERA AHDIKAVITT  420
YEGKHNHDVP AARGSGNYYM NRNSLNSSIP APIRPSAVNC YSNSSSFTNS LYNNTRHPAT  480
GNQESCSLDK FKNPGSFGYS ALNRSMSSHT DQAQYTDAAH SKAKDERKDD SFLQSFLSKD  540
Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-38202431878Probable WRKY transcription factor 4
2lex_A6e-38202431878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.297190.0cotyledon| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: In dry seeds, expressed in aleurone cells and embryos. Levels drop rapidly but transiently in the embryos of imbibed seeds. {ECO:0000269|PubMed:19199048}.
UniprotTISSUE SPECIFICITY: Expressed in aleurone cells (PubMed:15618416). Mostly expressed in aleurone layers and leaves, and, to a lower extent, in roots, panicles and embryos (PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:26025535}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G208800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014626730.10.0probable WRKY transcription factor 33 isoform X1
SwissprotQ6IEQ71e-110WRK24_ORYSJ; WRKY transcription factor WRKY24
TrEMBLI1N3420.0I1N342_SOYBN; Uncharacterized protein
STRINGGLYMA18G44030.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF107734114
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-111WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  3. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  4. Zhang L, et al.
    Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.
    Plant Sci., 2015. 236: p. 214-22
    [PMID:26025535]